Variant report

Variant	rs11231735
Chromosome Location	chr11:64039998-64039999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:64035134-64040308	SK-N-MC	brain:	n/a	n/a
2	BHLHE40	chr11:64039969-64040113	K562	blood:	n/a	n/a
3	POLR2A	chr11:64039944-64040085	K562	blood:	n/a	n/a
4	POLR2A	chr11:64039870-64040509	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr11:64039954-64040327	HepG2	liver:	n/a	n/a
6	MXI1	chr11:64038766-64040509	SK-N-SH	brain:	n/a	n/a
7	POLR2A	chr11:64035397-64040069	PFSK-1	brain:	n/a	n/a
8	POLR2A	chr11:64039867-64040290	PFSK-1	brain:	n/a	n/a
9	POLR2A	chr11:64039942-64040136	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64034991..64040375-chr11:64070988..64074526,14	MCF-7	breast:
2	chr11:64028329..64041732-chr11:64049023..64058851,39	MCF-7	breast:
3	chr11:64032072..64048684-chr11:64048768..64055711,68	MCF-7	breast:
4	chr11:64033536..64040775-chr11:64080684..64088458,16	K562	blood:
5	chr11:64036497..64040979-chr11:64067017..64069343,5	MCF-7	breast:
6	chr11:64033188..64045448-chr11:64059274..64075790,38	MCF-7	breast:

No data

Variant related genes	Relation type
BAD	TF binding region
GPR137	TF binding region
ENSG00000173153	Chromatin interaction
ENSG00000219435	Chromatin interaction
ENSG00000173264	Chromatin interaction
ENSG00000182450	Chromatin interaction
ENSG00000126432	Chromatin interaction
ENSG00000207024	Chromatin interaction
ENSG00000002330	Chromatin interaction
ENSG00000173113	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11231699	0.84[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes]
rs11231745	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2244621	0.91[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap]
rs2302263	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs28395877	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34499953	0.91[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs3751117	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3751121	1.00[AFR][1000 genomes]
rs3751122	0.86[CHD][hapmap];0.91[JPT][hapmap]
rs4930702	0.91[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs633561	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs73502335	0.84[ASN][1000 genomes]
rs953778	0.91[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv469961	chr11:63822940-64085967	Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
6	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
7	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
8	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
9	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
10	nsv468592	chr11:63924446-64042997	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
11	nsv555184	chr11:63924446-64042997	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
12	nsv869944	chr11:63932152-64123062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
13	nsv468593	chr11:63941734-64089874	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
14	nsv555185	chr11:63941734-64089874	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
15	nsv555186	chr11:63949095-64097233	Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
16	nsv897667	chr11:63964657-64078380	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
17	nsv897668	chr11:63964657-64085298	Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	163 gene(s)	inside rSNPs	diseases
18	nsv897669	chr11:63964657-64089874	Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
19	nsv897670	chr11:63964657-64097233	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
20	nsv897671	chr11:63964657-64150370	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
21	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
22	nsv897672	chr11:63979643-64082807	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
23	esv1802320	chr11:63987425-64154633	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
24	nsv897679	chr11:63994692-64150370	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
25	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
26	nsv1043277	chr11:64002997-64132030	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64038400-64040000	Enhancers	Fetal Brain Male	brain
2	chr11:64039000-64040200	Flanking Active TSS	Dnd41	blood
3	chr11:64039200-64040000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:64039200-64040000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:64039200-64040000	Flanking Active TSS	Rectal Smooth Muscle	rectum
6	chr11:64039200-64040000	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr11:64039200-64040000	Flanking Active TSS	K562	blood
8	chr11:64039400-64040000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:64039400-64040200	Enhancers	Spleen	Spleen
10	chr11:64039400-64040200	Flanking Active TSS	HepG2	liver
11	chr11:64039400-64042600	Weak transcription	Gastric	stomach
12	chr11:64039400-64042600	Weak transcription	Lung	lung
13	chr11:64039400-64042600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:64039400-64042800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:64039400-64042800	Weak transcription	Ovary	ovary
16	chr11:64039400-64043200	Weak transcription	Aorta	Aorta
17	chr11:64039400-64044200	Weak transcription	Small Intestine	intestine
18	chr11:64039400-64044400	Enhancers	Stomach Mucosa	stomach
19	chr11:64039600-64040000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:64039600-64040000	Enhancers	Primary hematopoietic stem cells	blood
21	chr11:64039600-64040000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:64039600-64040000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:64039600-64040000	Enhancers	Fetal Brain Female	brain
24	chr11:64039600-64040000	Genic enhancers	Fetal Stomach	stomach
25	chr11:64039600-64040000	Enhancers	Fetal Thymus	thymus
26	chr11:64039600-64040000	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr11:64039600-64040200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:64039600-64040200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr11:64039600-64040200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:64039600-64040200	Enhancers	Primary T cells fromperipheralblood	blood
31	chr11:64039600-64040200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
32	chr11:64039600-64040200	Enhancers	Brain Cingulate Gyrus	brain
33	chr11:64039600-64040200	Enhancers	Brain Germinal Matrix	brain
34	chr11:64039600-64040200	Enhancers	Brain Hippocampus Middle	brain
35	chr11:64039600-64040200	Enhancers	Brain Substantia Nigra	brain
36	chr11:64039600-64040200	Genic enhancers	Fetal Muscle Leg	muscle
37	chr11:64039600-64040200	Enhancers	Right Ventricle	heart
38	chr11:64039600-64040200	Enhancers	Osteobl	bone
39	chr11:64039600-64040400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:64039600-64040400	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr11:64039600-64040400	Enhancers	Fetal Heart	heart
42	chr11:64039600-64040400	Genic enhancers	Fetal Muscle Trunk	muscle
43	chr11:64039600-64041200	Enhancers	Placenta	Placenta
44	chr11:64039600-64041400	Enhancers	Duodenum Mucosa	Duodenum
45	chr11:64039600-64041400	Weak transcription	Thymus	Thymus
46	chr11:64039600-64041600	Enhancers	Liver	Liver
47	chr11:64039600-64041600	Enhancers	Colonic Mucosa	Colon
48	chr11:64039600-64041600	Enhancers	Fetal Intestine Large	intestine
49	chr11:64039600-64041600	Genic enhancers	Fetal Intestine Small	intestine
50	chr11:64039600-64041600	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links