Variant report

Variant	rs11231746
Chromosome Location	chr11:64070940-64070941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:64070938-64070967	MCF10A-Er-Src	breast:	n/a	n/a
2	MAX	chr11:64070611-64071010	K562	blood:	n/a	n/a
3	STAT3	chr11:64070873-64071029	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr11:64070811-64071004	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr11:64070851-64071035	HepG2	liver:	n/a	n/a
6	CEBPB	chr11:64070843-64071092	HepG2	liver:	n/a	n/a
7	CEBPB	chr11:64070856-64071073	A549	lung:	n/a	n/a
8	MYC	chr11:64070842-64071013	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr11:64070780-64071072	MCF10A-Er-Src	breast:	n/a	n/a
10	CEBPB	chr11:64070869-64071055	Hela-S3	cervix:	n/a	n/a
11	FOS	chr11:64070781-64071026	MCF10A-Er-Src	breast:	n/a	n/a
12	FOS	chr11:64070912-64071057	MCF10A-Er-Src	breast:	n/a	n/a
13	NR2F2	chr11:64070590-64071094	K562	blood:	n/a	n/a

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64068655..64075946-chr11:64105786..64111623,11	K562	blood:
2	chr11:64033188..64045448-chr11:64059274..64075790,38	MCF-7	breast:
3	chr11:63997014..63999742-chr11:64070693..64073511,5	MCF-7	breast:
4	chr11:64003628..64022712-chr11:64064086..64078429,56	MCF-7	breast:
5	chr11:64070411..64072227-chr11:64108642..64111595,2	MCF-7	breast:
6	chr11:63990938..63995618-chr11:64068467..64075569,11	MCF-7	breast:
7	chr11:64070461..64072737-chr2:174827568..174830464,2	K562	blood:
8	chr11:64070250..64072559-chr11:64125217..64126731,2	MCF-7	breast:
9	chr11:64062581..64067286-chr11:64069885..64074549,10	MCF-7	breast:
10	chr11:63973802..63976476-chr11:64070377..64073257,2	MCF-7	breast:
11	chr11:64069494..64072253-chr11:64119496..64122184,3	MCF-7	breast:
12	chr11:64012813..64019826-chr11:64070484..64074683,9	MCF-7	breast:
13	chr11:64066836..64070235-chr11:64070747..64073935,5	MCF-7	breast:
14	chr11:64069665..64072267-chr11:64127421..64129255,2	MCF-7	breast:
15	chr11:63950774..63958537-chr11:64070493..64074690,13	MCF-7	breast:
16	chr11:64005251..64012775-chr11:64065543..64076594,19	MCF-7	breast:

No data

Variant related genes	Relation type
TEX40	TF binding region
ESRRA	TF binding region
ENSG00000182450	Chromatin interaction
ENSG00000168071	Chromatin interaction
ENSG00000149781	Chromatin interaction
ENSG00000110011	Chromatin interaction
ENSG00000149761	Chromatin interaction
ENSG00000173457	Chromatin interaction
ENSG00000149743	Chromatin interaction
ENSG00000162302	Chromatin interaction
ENSG00000149782	Chromatin interaction
ENSG00000256940	Chromatin interaction
ENSG00000173511	Chromatin interaction
ENSG00000173486	Chromatin interaction
ENSG00000207024	Chromatin interaction
ENSG00000219435	Chromatin interaction
ENSG00000173264	Chromatin interaction
ENSG00000172845	Chromatin interaction
ENSG00000257086	Chromatin interaction
ENSG00000002330	Chromatin interaction
ENSG00000168439	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11231741	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11231749	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1317494	0.82[AMR][1000 genomes]
rs28364831	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28395882	0.82[AMR][1000 genomes]
rs56057146	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66493355	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7122759	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72922077	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72924108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7943988	0.82[AMR][1000 genomes]
rs9787810	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv469961	chr11:63822940-64085967	Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
6	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
7	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
8	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
9	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
10	nsv869944	chr11:63932152-64123062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
11	nsv468593	chr11:63941734-64089874	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
12	nsv555185	chr11:63941734-64089874	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
13	nsv555186	chr11:63949095-64097233	Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
14	nsv897667	chr11:63964657-64078380	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
15	nsv897668	chr11:63964657-64085298	Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	163 gene(s)	inside rSNPs	diseases
16	nsv897669	chr11:63964657-64089874	Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
17	nsv897670	chr11:63964657-64097233	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
18	nsv897671	chr11:63964657-64150370	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
19	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
20	nsv897672	chr11:63979643-64082807	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
21	esv1802320	chr11:63987425-64154633	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
22	nsv897679	chr11:63994692-64150370	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
23	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
24	nsv1043277	chr11:64002997-64132030	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
25	nsv897685	chr11:64048912-64150370	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
26	nsv897686	chr11:64049021-64072244	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
27	nsv897687	chr11:64049021-64078380	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64067600-64072000	Weak transcription	Aorta	Aorta
2	chr11:64068400-64071400	Weak transcription	Gastric	stomach
3	chr11:64068400-64071600	Weak transcription	Lung	lung
4	chr11:64068600-64071400	Weak transcription	Brain Angular Gyrus	brain
5	chr11:64068600-64071400	Weak transcription	Pancreas	Pancrea
6	chr11:64068600-64071400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:64068600-64071400	Weak transcription	Right Ventricle	heart
8	chr11:64068600-64071600	Weak transcription	Brain Substantia Nigra	brain
9	chr11:64068600-64071600	Weak transcription	Esophagus	oesophagus
10	chr11:64068600-64071600	Weak transcription	Left Ventricle	heart
11	chr11:64068600-64071600	Weak transcription	Psoas Muscle	Psoas
12	chr11:64068800-64071200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:64068800-64071400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:64068800-64071400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:64068800-64071400	Weak transcription	Brain Anterior Caudate	brain
16	chr11:64068800-64071400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:64068800-64071400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:64068800-64071400	Weak transcription	Right Atrium	heart
19	chr11:64068800-64071400	Weak transcription	HMEC	breast
20	chr11:64068800-64071400	Weak transcription	NHEK	skin
21	chr11:64068800-64071400	Weak transcription	NHLF	lung
22	chr11:64068800-64071600	Weak transcription	HUVEC	blood vessel
23	chr11:64068800-64071800	Weak transcription	HSMMtube	muscle
24	chr11:64069000-64071200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:64069000-64071200	Weak transcription	Liver	Liver
26	chr11:64069000-64071200	Weak transcription	Colonic Mucosa	Colon
27	chr11:64069000-64071400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:64069000-64071400	Weak transcription	Adipose Nuclei	Adipose
29	chr11:64069000-64071400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:64069000-64071400	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:64069000-64071400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:64069000-64071400	Weak transcription	NHDF-Ad	bronchial
33	chr11:64069000-64071600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:64069000-64071600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:64069200-64071400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr11:64069400-64071200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:64069400-64071400	Weak transcription	Spleen	Spleen
38	chr11:64069400-64071400	Weak transcription	A549	lung
39	chr11:64069600-64071200	Weak transcription	Placenta	Placenta
40	chr11:64069600-64071400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:64070600-64071200	Enhancers	Hela-S3	cervix
42	chr11:64070600-64071200	Enhancers	HepG2	liver
43	chr11:64070600-64071400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:64070600-64071400	Enhancers	GM12878-XiMat	blood
45	chr11:64070600-64071600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr11:64070600-64071800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr11:64070800-64071000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:64070800-64071000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
49	chr11:64070800-64071000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
50	chr11:64070800-64071000	Flanking Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links