Variant report

Variant	rs11231886
Chromosome Location	chr11:64598136-64598137
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64596216..64598533-chr11:64598563..64600941,2	K562	blood:
2	chr11:64597285..64598795-chr11:64609731..64611712,2	MCF-7	breast:
3	chr11:64592701..64598851-chr11:64599392..64606228,9	MCF-7	breast:
4	chr11:64578003..64579709-chr11:64596961..64598982,2	K562	blood:
5	chr11:64594545..64598533-chr11:64598563..64601703,3	K562	blood:
6	chr11:64590522..64592633-chr11:64597511..64599127,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171219	Chromatin interaction
ENSG00000133895	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11231889	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11231890	0.82[CHB][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12365548	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12365873	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12365878	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12790925	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12798965	0.84[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35654492	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35938015	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3825015	0.84[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4930277	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4930682	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4930683	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58790228	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs647145	0.82[CHD][hapmap]
rs7933683	0.90[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7936466	0.94[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942905	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs916606	0.85[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
2	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
3	nsv897698	chr11:64447420-64621573	Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv897699	chr11:64447420-64638041	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
6	nsv1049744	chr11:64486615-64630149	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
7	nsv832189	chr11:64487183-64620199	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
8	nsv469962	chr11:64527080-64621573	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
9	nsv897704	chr11:64584987-64701030	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
10	nsv897705	chr11:64591679-64701030	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
11	nsv897706	chr11:64591679-64721908	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64578200-64599000	Weak transcription	Spleen	Spleen
2	chr11:64578600-64602600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:64578800-64601400	Weak transcription	Stomach Mucosa	stomach
4	chr11:64582600-64609600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:64582600-64611000	Weak transcription	Primary B cells from cord blood	blood
6	chr11:64589600-64600800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:64590400-64602400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:64590600-64609400	Weak transcription	Fetal Lung	lung
9	chr11:64590800-64602600	Strong transcription	Placenta	Placenta
10	chr11:64590800-64604600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:64591000-64602600	Strong transcription	Placenta Amnion	Placenta Amnion
12	chr11:64591000-64610600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:64591200-64602400	Strong transcription	Esophagus	oesophagus
14	chr11:64591200-64605400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:64591200-64609600	Strong transcription	Fetal Intestine Small	intestine
16	chr11:64591200-64611600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:64591400-64604400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:64591600-64602000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:64591600-64602600	Strong transcription	Gastric	stomach
20	chr11:64591600-64611200	Weak transcription	Small Intestine	intestine
21	chr11:64592000-64604200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:64592600-64604200	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:64592800-64599800	Strong transcription	Fetal Intestine Large	intestine
24	chr11:64592800-64602400	Strong transcription	NHEK	skin
25	chr11:64592800-64602600	Strong transcription	Pancreas	Pancrea
26	chr11:64592800-64603000	Strong transcription	Duodenum Mucosa	Duodenum
27	chr11:64592800-64608200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:64593000-64598600	Weak transcription	Thymus	Thymus
29	chr11:64593000-64600800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:64593000-64603400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:64593000-64608400	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:64593400-64607400	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr11:64593400-64608200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:64593400-64611000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr11:64593600-64601200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:64593600-64601800	Strong transcription	Primary T cells from cord blood	blood
37	chr11:64593600-64603600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr11:64593800-64603200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:64593800-64611400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:64594000-64602000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:64594400-64609600	Strong transcription	Colonic Mucosa	Colon
42	chr11:64594600-64603000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:64595200-64600800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:64595200-64602800	Weak transcription	Fetal Muscle Leg	muscle
45	chr11:64595200-64604600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:64595400-64608600	Strong transcription	Fetal Stomach	stomach
47	chr11:64595600-64599400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:64595800-64599000	Weak transcription	HMEC	breast
49	chr11:64596000-64611600	Weak transcription	Right Atrium	heart
50	chr11:64596200-64609400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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