Variant report

Variant	rs11233358
Chromosome Location	chr11:71079402-71079403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11233373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233512	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17362292	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41515245	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57964441	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58025685	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60010150	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71076400-71082000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:71076400-71083600	Weak transcription	Brain Angular Gyrus	brain
3	chr11:71079400-71079600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:71079400-71080200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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