Variant report

Variant	rs112344790
Chromosome Location	chr10:23728423-23728424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23727668..23728613-chr16:56965645..56966488,2	Hela-S3	cervix:
2	chr10:23727770..23728754-chr6:170125045..170126039,2	Hela-S3	cervix:
3	chr10:23631888..23635089-chr10:23727661..23730060,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232640	Chromatin interaction
ENSG00000227704	Chromatin interaction
ENSG00000051108	Chromatin interaction
ENSG00000179133	Chromatin interaction
ENSG00000224215	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv975033	chr10:23726218-23738848	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv3407210	chr10:23727196-23730019	Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv3372977	chr10:23727571-23730319	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23727200-23729000	Active TSS	Thymus	Thymus
2	chr10:23727200-23729200	Active TSS	H1 Cell Line	embryonic stem cell
3	chr10:23727200-23729200	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:23727200-23729200	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr10:23727200-23729200	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr10:23727200-23729200	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr10:23727200-23729200	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr10:23727200-23729400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:23727200-23729400	Active TSS	Brain Cingulate Gyrus	brain
10	chr10:23727200-23729400	Active TSS	Fetal Brain Female	brain
11	chr10:23727200-23729800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:23727200-23729800	Active TSS	Stomach Smooth Muscle	stomach
13	chr10:23727200-23730000	Active TSS	Colon Smooth Muscle	Colon
14	chr10:23727200-23730200	Active TSS	Colonic Mucosa	Colon
15	chr10:23727200-23730600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:23727200-23731400	Active TSS	HSMMtube	muscle
17	chr10:23727200-23731600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:23727200-23731800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:23727400-23729000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:23727400-23729000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:23727400-23729000	Active TSS	Primary hematopoietic stem cells	blood
22	chr10:23727400-23729000	Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr10:23727400-23729200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:23727400-23729200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:23727400-23729200	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr10:23727400-23729200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:23727400-23729200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:23727400-23729200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:23727400-23729200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:23727400-23729200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:23727400-23729200	Active TSS	Pancreas	Pancrea
32	chr10:23727400-23729200	Active TSS	HepG2	liver
33	chr10:23727400-23729200	Active TSS	NH-A	brain
34	chr10:23727400-23729400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:23727400-23729400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:23727400-23729400	Active TSS	Primary T cells from cord blood	blood
37	chr10:23727400-23729400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
38	chr10:23727400-23729400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
39	chr10:23727400-23729400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr10:23727400-23729400	Active TSS	Brain Angular Gyrus	brain
41	chr10:23727400-23729400	Active TSS	Esophagus	oesophagus
42	chr10:23727400-23729400	Active TSS	Fetal Stomach	stomach
43	chr10:23727400-23729400	Active TSS	Placenta Amnion	Placenta Amnion
44	chr10:23727400-23729400	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr10:23727400-23729400	Active TSS	Sigmoid Colon	Sigmoid Colon
46	chr10:23727400-23729400	Active TSS	A549	lung
47	chr10:23727400-23729400	Active TSS	Osteobl	bone
48	chr10:23727400-23729600	Active TSS	Muscle Satellite Cultured Cells	--
49	chr10:23727400-23729600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:23727400-23729600	Active TSS	Fetal Intestine Small	intestine

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