Variant report

Variant	rs11234670
Chromosome Location	chr11:86228086-86228087
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86221748..86224210-chr11:86226851..86228577,2	MCF-7	breast:
2	chr11:86227984..86231236-chr11:86233662..86235563,3	MCF-7	breast:
3	chr11:86221104..86225436-chr11:86225475..86228538,5	K562	blood:
4	chr11:86225920..86228246-chr11:86229553..86231799,2	K562	blood:
5	chr11:86221142..86225436-chr11:86225475..86228641,4	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11234667	1.00[ASW][hapmap];0.91[CEU][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11234677	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11234687	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11512934	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11821635	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61904398	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61904412	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7952019	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86211600-86229800	Weak transcription	Brain Anterior Caudate	brain
2	chr11:86215000-86229800	Weak transcription	Lung	lung
3	chr11:86215800-86230000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:86218600-86229600	Weak transcription	Brain Germinal Matrix	brain
5	chr11:86220000-86230600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:86223000-86229800	Weak transcription	Gastric	stomach
7	chr11:86223000-86238200	Weak transcription	Pancreas	Pancrea
8	chr11:86223200-86230600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:86223800-86236800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:86223800-86237000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:86224600-86229200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:86224600-86230000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:86224600-86230000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:86224800-86229600	Weak transcription	Small Intestine	intestine
15	chr11:86224800-86232400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:86225000-86228600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:86225000-86230200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:86225400-86231000	Enhancers	NHEK	skin
19	chr11:86225400-86233200	Enhancers	HUVEC	blood vessel
20	chr11:86225600-86228200	Weak transcription	Psoas Muscle	Psoas
21	chr11:86225600-86230800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:86225800-86231400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:86226200-86229200	Weak transcription	Fetal Kidney	kidney
24	chr11:86226200-86229200	Enhancers	HMEC	breast
25	chr11:86226200-86231600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:86226400-86228600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:86226400-86229200	Enhancers	NHDF-Ad	bronchial
28	chr11:86226400-86231400	Enhancers	Osteobl	bone
29	chr11:86226600-86228800	Enhancers	A549	lung
30	chr11:86226600-86229200	Enhancers	K562	blood
31	chr11:86227000-86228200	Weak transcription	Fetal Intestine Large	intestine
32	chr11:86227000-86228400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr11:86227000-86228600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:86227000-86229200	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:86227000-86229400	Weak transcription	Fetal Stomach	stomach
36	chr11:86227000-86229600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:86227000-86229600	Weak transcription	Placenta	Placenta
38	chr11:86227000-86229800	Weak transcription	Aorta	Aorta
39	chr11:86227000-86229800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:86227000-86230200	Weak transcription	Adipose Nuclei	Adipose
41	chr11:86227000-86230800	Weak transcription	Spleen	Spleen
42	chr11:86227000-86234800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr11:86227000-86235000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr11:86227000-86235600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr11:86227200-86228400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:86227200-86228600	Weak transcription	Fetal Intestine Small	intestine
47	chr11:86227200-86229200	Weak transcription	Fetal Lung	lung
48	chr11:86227200-86229200	Weak transcription	Stomach Mucosa	stomach
49	chr11:86227200-86229600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:86227200-86229600	Weak transcription	Right Ventricle	heart

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