Variant report

Variant	rs11235671
Chromosome Location	chr11:72886043-72886044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr11:72885025-72886101	GM12878	blood:	n/a	n/a
2	MTA3	chr11:72884737-72886044	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:72875399..72877502-chr11:72883167..72886106,3	K562	blood:
2	chr11:72526100..72527930-chr11:72885676..72888595,2	K562	blood:
3	chr11:72523956..72526343-chr11:72883970..72886191,3	MCF-7	breast:
4	chr11:72882800..72886354-chr11:72892390..72894906,3	K562	blood:

Variant related genes	Relation type
ENSG00000256568	TF binding region
ENSG00000168010	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11235668	1.00[CEU][hapmap]
rs11235726	1.00[CEU][hapmap]
rs2298808	1.00[CEU][hapmap]
rs3741150	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv386	chr11:72849097-72893807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72876800-72886800	Weak transcription	Primary B cells from cord blood	blood
2	chr11:72879000-72887000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:72879200-72886800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:72880400-72889800	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:72880600-72889600	Enhancers	GM12878-XiMat	blood
6	chr11:72881400-72888800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:72882200-72886600	Enhancers	Fetal Heart	heart
8	chr11:72883000-72888000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:72883200-72886800	Weak transcription	HSMM	muscle
10	chr11:72883200-72888400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:72883400-72886400	Enhancers	Spleen	Spleen
12	chr11:72883600-72889200	Enhancers	Left Ventricle	heart
13	chr11:72883600-72889600	Enhancers	Right Atrium	heart
14	chr11:72883600-72890000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr11:72883800-72887800	Weak transcription	Colonic Mucosa	Colon
16	chr11:72883800-72889200	Enhancers	Fetal Muscle Leg	muscle
17	chr11:72883800-72889600	Enhancers	Ovary	ovary
18	chr11:72884000-72887600	Enhancers	Liver	Liver
19	chr11:72884200-72889400	Enhancers	Fetal Muscle Trunk	muscle
20	chr11:72884200-72889600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr11:72884400-72889400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr11:72884600-72887200	Weak transcription	NHDF-Ad	bronchial
23	chr11:72884600-72889600	Enhancers	Pancreas	Pancrea
24	chr11:72884800-72886600	Weak transcription	Fetal Intestine Large	intestine
25	chr11:72884800-72886600	Weak transcription	Fetal Intestine Small	intestine
26	chr11:72885000-72886400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:72885000-72888200	Weak transcription	Osteobl	bone
28	chr11:72885000-72888400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:72885200-72886600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:72885200-72886600	Weak transcription	Adipose Nuclei	Adipose
31	chr11:72885200-72886600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:72885200-72886600	Weak transcription	NHLF	lung
33	chr11:72885200-72887200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:72885400-72886400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:72885400-72886400	Weak transcription	Stomach Mucosa	stomach
36	chr11:72885400-72886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:72885400-72886600	Weak transcription	Placenta	Placenta
38	chr11:72885400-72886600	Enhancers	HepG2	liver
39	chr11:72885400-72887600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:72885400-72888600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:72885400-72888600	Weak transcription	Psoas Muscle	Psoas
42	chr11:72885600-72886600	Weak transcription	HUVEC	blood vessel
43	chr11:72885800-72887000	Weak transcription	Lung	lung
44	chr11:72886000-72886400	Weak transcription	Right Ventricle	heart
45	chr11:72886000-72888800	Weak transcription	Gastric	stomach
46	chr11:72886000-72889200	Enhancers	HSMMtube	muscle

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