Variant report

Variant	rs11236206
Chromosome Location	chr11:74383143-74383144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74380038..74381555-chr11:74382115..74384179,2	MCF-7	breast:
2	chr11:74382546..74386046-chr11:74386677..74389972,4	K562	blood:
3	chr11:74354455..74356432-chr11:74382989..74385315,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11236208	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12282262	0.82[EUR][1000 genomes]
rs12789086	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12789297	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55742006	0.83[ASN][1000 genomes]
rs7125505	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7948555	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74331400-74383400	Weak transcription	Brain Substantia Nigra	brain
2	chr11:74352600-74383400	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:74353200-74383600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:74357000-74383400	Weak transcription	Brain Anterior Caudate	brain
5	chr11:74369200-74385400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:74370400-74384000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:74370400-74384000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:74370800-74383200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:74372000-74393000	Weak transcription	Fetal Brain Female	brain
10	chr11:74373400-74384400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:74373800-74383800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:74374000-74383800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:74374200-74383200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:74374200-74383400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:74374200-74383400	Weak transcription	Fetal Stomach	stomach
16	chr11:74380400-74384600	Enhancers	Fetal Muscle Trunk	muscle
17	chr11:74381400-74385600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:74381400-74386000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:74381600-74394000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:74382400-74383200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr11:74382400-74383200	Enhancers	Hela-S3	cervix
22	chr11:74382400-74383800	Enhancers	Osteobl	bone
23	chr11:74382400-74385400	Enhancers	Fetal Muscle Leg	muscle
24	chr11:74382600-74384000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:74382600-74384200	Enhancers	HSMM	muscle
26	chr11:74382600-74384200	Enhancers	NH-A	brain
27	chr11:74382600-74384600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:74382600-74384800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:74382600-74384800	Enhancers	Pancreas	Pancrea
30	chr11:74382600-74384800	Enhancers	Spleen	Spleen
31	chr11:74382600-74385200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:74382600-74385200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:74382600-74385200	Enhancers	HSMMtube	muscle
34	chr11:74382600-74385200	Enhancers	NHDF-Ad	bronchial
35	chr11:74382600-74385400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr11:74382600-74385400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:74382600-74385400	Enhancers	NHLF	lung
38	chr11:74382800-74383600	Transcr. at gene 5' and 3'	A549	lung
39	chr11:74382800-74384200	Enhancers	Right Ventricle	heart
40	chr11:74382800-74384400	Enhancers	Psoas Muscle	Psoas
41	chr11:74382800-74385000	Enhancers	Colon Smooth Muscle	Colon
42	chr11:74382800-74385000	Enhancers	Left Ventricle	heart
43	chr11:74382800-74385200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:74382800-74385200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr11:74382800-74385200	Enhancers	HMEC	breast
46	chr11:74382800-74385400	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr11:74383000-74383200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:74383000-74385200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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