Variant report

Variant	rs11236389
Chromosome Location	chr11:75020708-75020709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75015150..75018476-chr11:75018809..75020946,3	MCF-7	breast:
2	chr11:75013016..75016949-chr11:75020139..75024522,5	K562	blood:
3	chr11:75015055..75017852-chr11:75020139..75022394,3	K562	blood:
4	chr11:75018656..75020776-chr11:75054796..75056696,2	K562	blood:

Variant related genes	Relation type
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11236390	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12360620	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
5	nsv522447	chr11:74982939-75068767	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74998600-75021000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:74998800-75041400	Weak transcription	Brain Germinal Matrix	brain
3	chr11:75000200-75037600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr11:75000400-75033000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr11:75000600-75021400	Weak transcription	HSMMtube	muscle
6	chr11:75000800-75023000	Weak transcription	Ovary	ovary
7	chr11:75005200-75026000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:75005200-75026400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:75005200-75033000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:75007800-75022600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr11:75009600-75022800	Weak transcription	A549	lung
12	chr11:75010600-75025000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr11:75012200-75026600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr11:75012600-75024800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:75013600-75022600	Weak transcription	Small Intestine	intestine
16	chr11:75013600-75022800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:75013800-75025200	Weak transcription	Liver	Liver
18	chr11:75014000-75021000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:75015000-75025000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr11:75016800-75021800	Enhancers	Pancreas	Pancrea
21	chr11:75017000-75021000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr11:75017000-75023400	Weak transcription	K562	blood
23	chr11:75017000-75025600	Genic enhancers	Fetal Stomach	stomach
24	chr11:75017000-75028400	Weak transcription	Fetal Brain Male	brain
25	chr11:75017400-75021600	Strong transcription	Fetal Intestine Small	intestine
26	chr11:75017600-75024800	Strong transcription	Primary T cells from cord blood	blood
27	chr11:75017800-75022400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr11:75018200-75034800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:75018400-75024800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr11:75018800-75022800	Weak transcription	HUVEC	blood vessel
31	chr11:75019000-75021400	Weak transcription	Brain Angular Gyrus	brain
32	chr11:75019000-75021600	Weak transcription	Brain Anterior Caudate	brain
33	chr11:75019000-75026400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:75019200-75021200	Weak transcription	Fetal Lung	lung
35	chr11:75019200-75021600	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:75019200-75022000	Weak transcription	Esophagus	oesophagus
37	chr11:75019200-75022600	Weak transcription	Left Ventricle	heart
38	chr11:75019400-75020800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:75019400-75021000	Weak transcription	Colon Smooth Muscle	Colon
40	chr11:75019400-75021200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:75019400-75021200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:75019400-75021200	Weak transcription	Fetal Muscle Leg	muscle
43	chr11:75019400-75021600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:75019400-75021600	Weak transcription	Psoas Muscle	Psoas
45	chr11:75019400-75021600	Weak transcription	Right Ventricle	heart
46	chr11:75019400-75021600	Weak transcription	Stomach Mucosa	stomach
47	chr11:75019800-75022000	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:75019800-75022400	Strong transcription	Fetal Intestine Large	intestine
49	chr11:75020000-75020800	Enhancers	Fetal Heart	heart
50	chr11:75020000-75021200	Weak transcription	HSMM	muscle

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