Variant report

Variant	rs11236427
Chromosome Location	chr11:75136418-75136419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75099560..75100493-chr11:75135976..75137295,5	K562	blood:
2	chr11:75104656..75107208-chr11:75134725..75136452,2	MCF-7	breast:
3	chr11:75109263..75112751-chr11:75131805..75136633,9	MCF-7	breast:
4	chr11:75110363..75111935-chr11:75135955..75138185,2	K562	blood:
5	chr11:75118496..75120014-chr11:75135285..75137325,2	K562	blood:
6	chr11:75136185..75138324-chr11:75272295..75274643,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149273	Chromatin interaction
ENSG00000206941	Chromatin interaction
ENSG00000149257	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12280035	1.00[CHB][hapmap]
rs638453	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv897921	chr11:75115893-75147661	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv897922	chr11:75116733-75147661	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
6	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75117400-75139000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr11:75118200-75139000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:75118200-75139600	Weak transcription	Small Intestine	intestine
4	chr11:75119400-75139800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:75123400-75138800	Weak transcription	Fetal Kidney	kidney
6	chr11:75123400-75140000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:75123600-75139000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr11:75126200-75139400	Weak transcription	Esophagus	oesophagus
9	chr11:75126400-75138000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:75126400-75139400	Weak transcription	Ovary	ovary
11	chr11:75126400-75139600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:75126400-75140600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:75126600-75138200	Weak transcription	Left Ventricle	heart
14	chr11:75126600-75139000	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:75126600-75139200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr11:75127600-75137400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:75128000-75138800	Weak transcription	GM12878-XiMat	blood
18	chr11:75128200-75138800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr11:75129400-75141200	Weak transcription	Aorta	Aorta
20	chr11:75130200-75139000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:75130400-75139000	Weak transcription	HMEC	breast
22	chr11:75131000-75139000	Weak transcription	NH-A	brain
23	chr11:75131200-75138800	Weak transcription	HUVEC	blood vessel
24	chr11:75131200-75139400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:75131400-75139000	Weak transcription	NHLF	lung
26	chr11:75131800-75137200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:75132000-75139000	Weak transcription	Hela-S3	cervix
28	chr11:75132200-75138800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:75132600-75137000	Strong transcription	Fetal Brain Female	brain
30	chr11:75132600-75138600	Weak transcription	Primary B cells from cord blood	blood
31	chr11:75132600-75138800	Weak transcription	Fetal Brain Male	brain
32	chr11:75132800-75137600	Strong transcription	Brain Germinal Matrix	brain
33	chr11:75133000-75136800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:75133800-75139000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:75134000-75138600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr11:75134000-75139400	Weak transcription	Colonic Mucosa	Colon
37	chr11:75134000-75141000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:75134200-75136600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:75134200-75136600	Enhancers	Right Atrium	heart
40	chr11:75134200-75137400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr11:75134200-75138800	Weak transcription	Pancreas	Pancrea
42	chr11:75134200-75139000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr11:75134200-75139000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:75134200-75139400	Weak transcription	Liver	Liver
45	chr11:75134200-75141400	Weak transcription	HSMMtube	muscle
46	chr11:75134400-75136600	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:75134400-75138200	Strong transcription	Fetal Stomach	stomach
48	chr11:75134400-75138800	Strong transcription	Fetal Intestine Small	intestine
49	chr11:75134600-75136600	Enhancers	A549	lung
50	chr11:75134600-75137600	Weak transcription	Primary T cells fromperipheralblood	blood

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