Variant report

Variant	rs11236860
Chromosome Location	chr11:76400254-76400255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1806527	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1047069	chr11:76367686-76420813	Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv1850014	chr11:76384895-76464814	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76384400-76412800	Weak transcription	Right Atrium	heart
2	chr11:76397600-76400400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:76398000-76401600	Weak transcription	Hela-S3	cervix
4	chr11:76398200-76401400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:76398200-76409400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:76398400-76401600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:76400000-76401000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:76400000-76401600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:76400000-76402200	Enhancers	Placenta	Placenta
10	chr11:76400000-76403000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:76400200-76400400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr11:76400200-76400600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:76400200-76400600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:76400200-76400800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:76400200-76401000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr11:76400200-76401000	Enhancers	K562	blood
17	chr11:76400200-76401600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:76400200-76409200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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