Variant report

Variant	rs11237225
Chromosome Location	chr11:77283561-77283562
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10160677	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10793255	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10899386	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899387	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899389	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899394	0.83[EUR][1000 genomes]
rs11237215	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11237220	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237236	0.88[ASN][1000 genomes]
rs11237244	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11237249	0.85[ASN][1000 genomes]
rs11512896	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11602520	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11823651	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2032395	0.87[EUR][1000 genomes]
rs4509797	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6592738	0.85[EUR][1000 genomes]
rs7129556	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72945508	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7927173	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2752651	chr11:77211136-77318279	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3445650	chr11:77282241-77286843	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11237225	INTS4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77279200-77283800	Enhancers	Pancreas	Pancrea
2	chr11:77279600-77284800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:77280800-77299600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:77282400-77284200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:77282400-77284400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:77282600-77284000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:77282600-77284200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr11:77282600-77284200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
9	chr11:77282800-77284400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:77283000-77284400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr11:77283000-77284400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr11:77283000-77284400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:77283000-77284600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:77283200-77283600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:77283200-77283800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:77283400-77284000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:77283400-77284000	Active TSS	Ovary	ovary
18	chr11:77283400-77284200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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