Variant report

Variant	rs11237262
Chromosome Location	chr11:77377418-77377419
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77377396..77379396-chr11:77381903..77384693,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11237276	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1038974	chr11:77284036-77431228	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1041384	chr11:77284558-77419809	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1048892	chr11:77290458-77431228	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1053074	chr11:77290458-77435831	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv468641	chr11:77301341-77420314	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv555452	chr11:77301341-77420314	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
11	nsv1035494	chr11:77309696-77431228	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77356000-77377800	Weak transcription	Osteobl	bone
2	chr11:77360400-77419200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:77367600-77377800	Weak transcription	HepG2	liver
4	chr11:77368800-77378000	Weak transcription	Esophagus	oesophagus
5	chr11:77369400-77378000	Weak transcription	Fetal Kidney	kidney
6	chr11:77370000-77377800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:77370000-77377800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:77370000-77378000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:77370000-77378000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:77370000-77378000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:77370000-77378000	Weak transcription	NHLF	lung
12	chr11:77370000-77410400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:77370200-77378000	Weak transcription	K562	blood
14	chr11:77370200-77380200	Weak transcription	NHDF-Ad	bronchial
15	chr11:77370400-77378000	Weak transcription	HSMMtube	muscle
16	chr11:77370800-77377800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:77372400-77378000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:77372600-77377800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:77372600-77378000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:77372800-77377800	Weak transcription	Brain Substantia Nigra	brain
21	chr11:77372800-77378000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:77372800-77378000	Weak transcription	NHEK	skin
23	chr11:77373400-77378000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:77373400-77381200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:77373600-77378000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:77373800-77378000	Weak transcription	Brain Germinal Matrix	brain
27	chr11:77373800-77378000	Weak transcription	Fetal Brain Female	brain
28	chr11:77373800-77379800	Strong transcription	HSMM	muscle
29	chr11:77373800-77413600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:77374000-77377600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:77374000-77377800	Weak transcription	Hela-S3	cervix
32	chr11:77374000-77378000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:77374000-77378000	Weak transcription	Left Ventricle	heart
34	chr11:77374000-77378000	Weak transcription	Lung	lung
35	chr11:77374000-77378000	Weak transcription	Thymus	Thymus
36	chr11:77374000-77416200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:77374200-77377600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:77374200-77377600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr11:77374200-77377800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:77374200-77377800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:77374200-77377800	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:77374200-77377800	Weak transcription	HUVEC	blood vessel
43	chr11:77374200-77378000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:77374200-77378000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:77374200-77378000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:77374200-77378000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:77374200-77378000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr11:77374200-77378000	Weak transcription	Fetal Stomach	stomach
49	chr11:77374200-77378000	Weak transcription	Gastric	stomach
50	chr11:77374200-77417400	Strong transcription	Monocytes-CD14+_RO01746	blood

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