Variant report

Variant	rs11237302
Chromosome Location	chr11:77519913-77519914
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77517980..77520549-chr11:77523532..77525489,2	K562	blood:
2	chr11:77519457..77522143-chr11:77529403..77531820,3	K562	blood:

Variant related genes	Relation type
ENSG00000048649	Chromatin interaction
ENSG00000219529	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	esv2516959	chr11:77518757-77520292	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv2071392	chr11:77519401-77520103	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3462974	chr11:77519440-77519987	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3519383	chr11:77519471-77519995	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3519382	chr11:77519475-77519973	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3519384	chr11:77519491-77519920	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3462952	chr11:77519496-77519953	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3462929	chr11:77519501-77519957	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3519387	chr11:77519511-77519950	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv3519386	chr11:77519514-77519941	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77463800-77527000	Weak transcription	Aorta	Aorta
2	chr11:77475200-77527800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:77475400-77522000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:77475400-77529000	Weak transcription	NHLF	lung
5	chr11:77475400-77530000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:77475800-77522000	Weak transcription	Hela-S3	cervix
7	chr11:77482800-77525800	Weak transcription	Fetal Lung	lung
8	chr11:77487400-77522000	Weak transcription	Placenta	Placenta
9	chr11:77495800-77528200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:77496000-77530200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:77499000-77525600	Weak transcription	HMEC	breast
12	chr11:77501200-77525800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:77501400-77521600	Weak transcription	Fetal Kidney	kidney
14	chr11:77501400-77526800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:77503400-77525800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:77503600-77525000	Weak transcription	Ovary	ovary
17	chr11:77503600-77529600	Weak transcription	Right Ventricle	heart
18	chr11:77503800-77521200	Weak transcription	Fetal Thymus	thymus
19	chr11:77503800-77525800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:77504000-77521800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:77504000-77524400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:77504800-77524600	Weak transcription	Fetal Intestine Large	intestine
23	chr11:77504800-77525200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:77505000-77522200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:77505000-77524000	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:77505000-77528400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:77505200-77521600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:77505200-77524200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:77505400-77525800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr11:77505600-77520000	Weak transcription	Primary T cells from cord blood	blood
31	chr11:77505600-77521400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:77506800-77528200	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:77508000-77527800	Weak transcription	Colon Smooth Muscle	Colon
34	chr11:77509400-77528800	Weak transcription	Brain Germinal Matrix	brain
35	chr11:77509800-77530000	Weak transcription	NH-A	brain
36	chr11:77510000-77521600	Weak transcription	Thymus	Thymus
37	chr11:77510000-77524600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:77510800-77521200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:77511200-77520200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr11:77511400-77526000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:77512000-77521000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:77512000-77521200	Weak transcription	Brain Anterior Caudate	brain
43	chr11:77512000-77521200	Weak transcription	Pancreas	Pancrea
44	chr11:77512000-77522000	Weak transcription	Adipose Nuclei	Adipose
45	chr11:77512000-77522400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr11:77512000-77522800	Weak transcription	Fetal Stomach	stomach
47	chr11:77512000-77524800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:77512000-77525800	Weak transcription	NHDF-Ad	bronchial
49	chr11:77512000-77529600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:77512200-77522000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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