Variant report

Variant	rs11238589
Chromosome Location	chr10:44057998-44057999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44056427..44058289-chr10:44062144..44064267,2	K562	blood:
2	chr10:44057543..44059828-chr10:44101141..44103424,2	K562	blood:
3	chr10:44055755..44058287-chr10:44068449..44071226,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232004	Chromatin interaction
ENSG00000198298	Chromatin interaction
ENSG00000196793	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11238596	1.00[MEX][hapmap]
rs11238611	1.00[MEX][hapmap]
rs12257738	1.00[AMR][1000 genomes]
rs12261773	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs12266658	1.00[AMR][1000 genomes]
rs12269340	1.00[AMR][1000 genomes]
rs13376803	0.86[ASW][hapmap]
rs17153701	0.86[ASW][hapmap];1.00[MEX][hapmap]
rs58624696	1.00[AMR][1000 genomes]
rs6593361	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798523	chr10:44051698-44070754	Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44050000-44058600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
2	chr10:44050400-44069200	Weak transcription	Fetal Thymus	thymus
3	chr10:44053000-44069000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:44053000-44069200	Weak transcription	Thymus	Thymus
5	chr10:44053200-44062600	Weak transcription	Brain Germinal Matrix	brain
6	chr10:44053200-44062800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:44053200-44066600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:44053200-44068400	Weak transcription	NHDF-Ad	bronchial
9	chr10:44053200-44068800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:44053200-44068800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:44053200-44068800	Weak transcription	Hela-S3	cervix
12	chr10:44053200-44068800	Weak transcription	HSMMtube	muscle
13	chr10:44053400-44062800	Weak transcription	Adipose Nuclei	Adipose
14	chr10:44053400-44068800	Weak transcription	Brain Substantia Nigra	brain
15	chr10:44053600-44058200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:44053600-44059200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:44053600-44059200	Weak transcription	Pancreas	Pancrea
18	chr10:44053600-44059200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:44053600-44061600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:44053600-44062600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:44053600-44062800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:44053600-44064400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:44053600-44064600	Weak transcription	NHLF	lung
24	chr10:44053600-44068200	Weak transcription	Fetal Kidney	kidney
25	chr10:44053600-44068600	Weak transcription	NH-A	brain
26	chr10:44053600-44068800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:44053600-44068800	Weak transcription	Psoas Muscle	Psoas
28	chr10:44053600-44068800	Weak transcription	Right Ventricle	heart
29	chr10:44053600-44069000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:44053600-44069200	Weak transcription	Left Ventricle	heart
31	chr10:44053800-44059200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:44053800-44061600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:44053800-44061600	Weak transcription	Fetal Brain Female	brain
34	chr10:44053800-44063200	Weak transcription	Brain Angular Gyrus	brain
35	chr10:44053800-44066600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr10:44053800-44068600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr10:44053800-44068800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:44053800-44069000	Weak transcription	HSMM	muscle
39	chr10:44054200-44058000	Weak transcription	Fetal Stomach	stomach
40	chr10:44054200-44061400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr10:44054200-44062800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:44054200-44069000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:44054400-44066400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:44055000-44058000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:44055000-44058600	Weak transcription	Fetal Muscle Leg	muscle
46	chr10:44055000-44058600	Weak transcription	Small Intestine	intestine
47	chr10:44055000-44059200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:44055000-44059400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:44055000-44062800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:44055000-44062800	Weak transcription	Osteobl	bone

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