Variant report

Variant	rs11238788
Chromosome Location	chr10:44455772-44455773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10508876	0.83[EUR][1000 genomes]
rs10899949	0.90[CHB][hapmap]
rs10899958	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238791	0.83[EUR][1000 genomes]
rs2863230	0.94[ASN][1000 genomes]
rs6593375	0.91[ASN][1000 genomes]
rs67743392	0.81[EUR][1000 genomes]
rs7067919	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072297	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44437600-44460800	Weak transcription	Gastric	stomach
2	chr10:44452400-44456600	Weak transcription	Right Atrium	heart
3	chr10:44453000-44460200	Enhancers	Ovary	ovary
4	chr10:44453400-44455800	Enhancers	Fetal Heart	heart
5	chr10:44454400-44456000	Weak transcription	Right Ventricle	heart
6	chr10:44454600-44456200	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr10:44454600-44456400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:44454600-44457200	Weak transcription	Spleen	Spleen
9	chr10:44454800-44455800	Bivalent Enhancer	Fetal Stomach	stomach
10	chr10:44455000-44456000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr10:44455000-44457200	Weak transcription	Left Ventricle	heart
12	chr10:44455000-44460800	Weak transcription	Aorta	Aorta
13	chr10:44455200-44456400	Enhancers	Fetal Muscle Trunk	muscle
14	chr10:44455400-44455800	Enhancers	Fetal Brain Male	brain
15	chr10:44455400-44456200	Enhancers	Lung	lung
16	chr10:44455400-44456200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:44455400-44456600	Weak transcription	Fetal Kidney	kidney
18	chr10:44455600-44455800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:44455600-44462000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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