Variant report

Variant	rs11238862
Chromosome Location	chr10:44607298-44607299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10218996	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10508882	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10899981	0.84[AMR][1000 genomes]
rs10899982	0.85[AMR][1000 genomes]
rs10899985	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11238853	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11238857	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11238858	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11238863	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11238864	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11238866	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11238867	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11238869	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11238870	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11238873	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11815950	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12241133	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12254583	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12254704	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12265921	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12266428	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12267582	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12761597	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12763847	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12764460	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12766445	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12771977	0.89[AMR][1000 genomes]
rs12774221	0.87[AMR][1000 genomes]
rs12774482	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12777927	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12778108	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12781467	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1873758	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34352681	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34390066	0.89[AMR][1000 genomes]
rs35178639	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35224046	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35799836	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4948602	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4948603	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4948604	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4948824	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4948826	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4948830	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4948833	0.89[AMR][1000 genomes]
rs4948835	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4948838	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4948840	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4948841	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4948845	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55774075	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56090994	0.87[AMR][1000 genomes]
rs6593400	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67748318	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7082703	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71491028	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72784832	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7895878	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7904643	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44603800-44607400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:44607200-44607400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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