Variant report

Variant	rs11238865
Chromosome Location	chr10:44607454-44607455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11238836	0.88[AMR][1000 genomes]
rs11238852	0.94[AMR][1000 genomes]
rs12256661	1.00[AMR][1000 genomes]
rs12263003	1.00[AMR][1000 genomes]
rs12766571	1.00[AMR][1000 genomes]
rs35024595	0.94[AMR][1000 genomes]
rs66536810	0.94[AMR][1000 genomes]
rs67269496	0.94[AMR][1000 genomes]
rs72784807	0.83[AMR][1000 genomes]
rs72784819	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44607400-44607600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:44607400-44607800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:44607400-44608000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr10:44607400-44608000	Enhancers	Lung	lung
5	chr10:44607400-44608200	Enhancers	Stomach Mucosa	stomach
6	chr10:44607400-44608600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr10:44607400-44609800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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