Variant report

Variant	rs11239129
Chromosome Location	chr10:45051476-45051477
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12414871	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12415991	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12773878	0.81[EUR][1000 genomes]
rs1317891	0.81[EUR][1000 genomes]
rs17156596	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17156619	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17156664	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34603070	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34828552	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61852422	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs744552	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45044600-45070200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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