Variant report

Variant	rs11239161
Chromosome Location	chr10:45083435-45083436
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11239221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12360023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1042549	chr10:45071890-45117466	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45081600-45083600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:45082000-45085200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:45082200-45083800	Enhancers	Fetal Muscle Leg	muscle
4	chr10:45082400-45083800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr10:45083000-45085800	Bivalent Enhancer	Fetal Stomach	stomach
6	chr10:45083200-45085400	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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