Variant report

Variant	rs11239280
Chromosome Location	chr10:45417288-45417289
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10508891	0.95[ASN][1000 genomes]
rs10900133	0.95[ASN][1000 genomes]
rs12219307	0.95[ASN][1000 genomes]
rs12221140	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12571229	0.95[ASN][1000 genomes]
rs57173473	1.00[AFR][1000 genomes]
rs58256493	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7908256	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45406400-45419000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:45407800-45422800	Weak transcription	Ovary	ovary
3	chr10:45410000-45419000	Weak transcription	Pancreas	Pancrea
4	chr10:45410200-45430400	Weak transcription	Gastric	stomach
5	chr10:45410600-45419600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:45413200-45420400	Weak transcription	Fetal Kidney	kidney
7	chr10:45413400-45428200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:45415400-45420000	Weak transcription	HSMMtube	muscle
9	chr10:45416200-45419800	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:45416600-45418400	Weak transcription	Brain Angular Gyrus	brain
11	chr10:45417000-45417600	Enhancers	Fetal Intestine Small	intestine
12	chr10:45417000-45417800	Enhancers	Duodenum Mucosa	Duodenum
13	chr10:45417000-45418000	Enhancers	Fetal Intestine Large	intestine
14	chr10:45417000-45418400	Weak transcription	Fetal Stomach	stomach
15	chr10:45417000-45434000	Weak transcription	Fetal Brain Female	brain
16	chr10:45417200-45417400	Enhancers	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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