Variant report

Variant	rs11239495
Chromosome Location	chr10:45875062-45875063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45869730..45871343-chr10:45873216..45875986,2	K562	blood:
2	chr10:45873911..45876149-chr10:45876487..45879214,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11239502	0.93[AFR][1000 genomes]
rs11239504	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv895107	chr10:45850300-45953767	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45870000-45876400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr10:45870400-45876400	Weak transcription	Thymus	Thymus
3	chr10:45870600-45891200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:45870800-45877200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr10:45870800-45880400	Weak transcription	Esophagus	oesophagus
6	chr10:45871400-45904600	Weak transcription	Gastric	stomach
7	chr10:45871600-45877200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:45871600-45894000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:45871800-45877200	Enhancers	Placenta	Placenta
10	chr10:45872000-45875600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr10:45872200-45883800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:45872400-45875400	Weak transcription	Fetal Thymus	thymus
13	chr10:45872400-45876800	Genic enhancers	Primary B cells from peripheral blood	blood
14	chr10:45872400-45877000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:45873400-45875400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:45873600-45875200	Enhancers	Fetal Intestine Large	intestine
17	chr10:45873600-45875200	Enhancers	Fetal Intestine Small	intestine
18	chr10:45873800-45875200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:45873800-45876000	Enhancers	GM12878-XiMat	blood
20	chr10:45874000-45875400	Weak transcription	Pancreas	Pancrea
21	chr10:45874200-45877000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:45874200-45877400	Genic enhancers	Primary B cells from cord blood	blood
23	chr10:45874400-45875200	Bivalent Enhancer	Adipose Nuclei	Adipose
24	chr10:45874400-45875800	Enhancers	Duodenum Mucosa	Duodenum
25	chr10:45874600-45875800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:45874600-45877800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:45874800-45876600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:45875000-45876800	Genic enhancers	Spleen	Spleen

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