Variant report

Variant	rs11239952
Chromosome Location	chr1:146715204-146715205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:156)
CpG islands
(count:61)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:156 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr1:146713833-146715298	ECC-1	luminal epithelium:	n/a	n/a
2	POLR2A	chr1:146713941-146715310	GM19099	blood:	n/a	n/a
3	ZNF263	chr1:146713889-146715395	HEK293-T-REx	kidney:	n/a	n/a
4	POLR2A	chr1:146713919-146715429	Hela-S3	cervix:	n/a	n/a
5	SMARCB1	chr1:146713969-146715384	Hela-S3	cervix:	n/a	n/a
6	HMGN3	chr1:146714022-146715339	K562	blood:	n/a	n/a
7	CTCF	chr1:146715090-146715242	GM19239	blood:	n/a	n/a
8	TCF7L2	chr1:146713840-146715726	Hela-S3	cervix:	n/a	chr1:146713924-146713938
9	SMC3	chr1:146713895-146715313	Hela-S3	cervix:	n/a	chr1:146714765-146714779 chr1:146714231-146714245 chr1:146714765-146714775
10	BRCA1	chr1:146713954-146715451	Hela-S3	cervix:	n/a	n/a
11	CTCF	chr1:146715080-146715230	AG04450	lung:	n/a	n/a
12	POLR2A	chr1:146713928-146715209	PFSK-1	brain:	n/a	n/a
13	POLR2A	chr1:146713819-146715333	GM12892	blood:	n/a	n/a
14	RCOR1	chr1:146713788-146715768	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr1:146715145-146715281	MCF-7	breast:	n/a	n/a
16	ZBTB7A	chr1:146714107-146715383	ECC-1	luminal epithelium:	n/a	chr1:146714764-146714773
17	CCNT2	chr1:146714008-146715304	K562	blood:	n/a	chr1:146715176-146715185
18	NRF1	chr1:146714081-146715246	GM12878	blood:	n/a	chr1:146714539-146714548
19	POLR2A	chr1:146713959-146715231	Hela-S3	cervix:	n/a	n/a
20	EP300	chr1:146713918-146715370	GM12878	blood:	n/a	chr1:146714608-146714624 chr1:146715308-146715318 chr1:146714539-146714555
21	CTCF	chr1:146715160-146715310	HCPEpiC	choroid plexus:	n/a	n/a
22	CTCF	chr1:146715060-146715210	GM12867	blood:	n/a	n/a
23	KAP1	chr1:146713817-146715899	HEK293	kidney:	n/a	n/a
24	CTCF	chr1:146715140-146715290	GM12874	blood:	n/a	n/a
25	CTCF	chr1:146715080-146715230	HPF	lung:	n/a	n/a
26	MAX	chr1:146713876-146715310	K562	blood:	n/a	n/a
27	MYC	chr1:146713827-146715310	K562	blood:	n/a	n/a
28	CTCF	chr1:146715120-146715270	HCFaa	heart:	n/a	n/a
29	CHD2	chr1:146714617-146715218	K562	blood:	n/a	n/a
30	HCFC1	chr1:146713350-146715947	Hela-S3	cervix:	n/a	n/a
31	SMARCC2	chr1:146713775-146715351	Hela-S3	cervix:	n/a	n/a
32	ZNF143	chr1:146714007-146715299	H1-hESC	embryonic stem cell:	n/a	n/a
33	E2F6	chr1:146715133-146715268	K562	blood:	n/a	n/a
34	CTCF	chr1:146715140-146715290	HVMF	connective:	n/a	n/a
35	POLR2A	chr1:146713831-146715423	PBDE	blood:	n/a	n/a
36	CTCF	chr1:146713528-146715647	SK-N-SH	brain:	n/a	chr1:146714231-146714244 chr1:146714770-146714778 chr1:146714765-146714778 chr1:146714231-146714244 chr1:146714763-146714781 chr1:146714758-146714779 chr1:146714764-146714780 chr1:146714230-146714246 chr1:146713904-146713911 chr1:146714229-146714247
37	MYC	chr1:146715202-146715234	MCF-7	breast:	n/a	n/a
38	CTCF	chr1:146715060-146715210	GM06990	blood:	n/a	n/a
39	CHD2	chr1:146714024-146715407	GM12878	blood:	n/a	n/a
40	POLR2A	chr1:146713925-146715429	HL-60	blood:	n/a	n/a
41	MXI1	chr1:146713969-146715354	HepG2	liver:	n/a	n/a
42	BHLHE40	chr1:146713920-146715305	K562	blood:	n/a	chr1:146714542-146714558
43	MXI1	chr1:146714005-146715314	Hela-S3	cervix:	n/a	n/a
44	UBTF	chr1:146714108-146715343	K562	blood:	n/a	n/a
45	RCOR1	chr1:146713521-146715468	IMR90	lung:	n/a	n/a
46	MAX	chr1:146715072-146715319	K562	blood:	n/a	n/a
47	HDAC2	chr1:146713602-146715538	MCF-7	breast:	n/a	n/a
48	MAX	chr1:146713808-146715369	HepG2	liver:	n/a	n/a
49	CTCF	chr1:146715080-146715230	GM12865	blood:	n/a	n/a
50	JUND	chr1:146713780-146715344	K562	blood:	n/a	chr1:146715043-146715051 chr1:146715044-146715051

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:146715159-146715209	HEK293	kidney:	embryo
2	chr1:146715159-146715209	H1-hESC	embryonic stem cell:	embryo
3	chr1:146715159-146715209	HRCEpiC	kidney:	n/a
4	chr1:146715159-146715209	T-47D	breast:	n/a
5	chr1:146715159-146715209	Hepatocyte	liver:	n/a
6	chr1:146715159-146715209	HCT-116	colon:	n/a
7	chr1:146715159-146715209	NHDF-neo	bronchial:	n/a
8	chr1:146715159-146715209	SKMC	muscle:	n/a
9	chr1:146715159-146715209	GM06990	blood:	n/a
10	chr1:146715159-146715209	Caco-2	colon:	n/a
11	chr1:146715159-146715209	AG10803	skin:	n/a
12	chr1:146715159-146715209	AG04450	lung:	fetal
13	chr1:146715159-146715209	HL-60	blood:	n/a
14	chr1:146715159-146715209	HepG2	liver:	n/a
15	chr1:146715159-146715209	HPAEpiC	pulmonary alveolar:	n/a
16	chr1:146715159-146715209	HUVEC	blood vessel:	n/a
17	chr1:146715159-146715209	HNPCEpiC	eye:	n/a
18	chr1:146715159-146715209	MCF-7	breast:	n/a
19	chr1:146715159-146715209	IMR90	lung:	fetal
20	chr1:146715159-146715209	GM12891	blood:	n/a
21	chr1:146715159-146715209	NT2-D1	testis:	n/a
22	chr1:146715159-146715209	BJ	skin:	n/a
23	chr1:146715159-146715209	HRPEpiC	eye:	n/a
24	chr1:146715159-146715209	MCF10A-Er-Src	breast:	n/a
25	chr1:146715159-146715209	HCM	heart:	n/a
26	chr1:146715159-146715209	PANC-1	pancreas:	n/a
27	chr1:146715159-146715209	SK-N-MC	brain:	n/a
28	chr1:146715159-146715209	HMEC	breast:	n/a
29	chr1:146715159-146715209	GM12892	blood:	n/a
30	chr1:146715159-146715209	K562	blood:	n/a
31	chr1:146715159-146715209	NH-A	brain:	n/a
32	chr1:146715159-146715209	LNCaP	prostate:	n/a
33	chr1:146715159-146715209	AoSMC	blood vessel:	n/a
34	chr1:146715159-146715209	AG09319	gingival:	n/a
35	chr1:146715159-146715209	AG09309	skin:	n/a
36	chr1:146715159-146715209	RPTEC	kidney:	n/a
37	chr1:146715159-146715209	BE2_C	brain:	n/a
38	chr1:146715159-146715209	HIPEpiC	eye:	n/a
39	chr1:146715159-146715209	HRE	kidney:	n/a
40	chr1:146715159-146715209	GM19239	blood:	n/a
41	chr1:146715159-146715209	ProgFib	skin:	n/a
42	chr1:146715159-146715209	HAEpiC	amniotic membrane:	n/a
43	chr1:146715159-146715209	Jurkat	blood:	n/a
44	chr1:146715159-146715209	CMK	blood:	n/a
45	chr1:146715159-146715209	A549	lung:	n/a
46	chr1:146715159-146715209	Hela-S3	cervix:	n/a
47	chr1:146715159-146715209	SAEC	small airway:	n/a
48	chr1:146715159-146715209	SK-N-SH_RA	brain:	n/a
49	chr1:146715159-146715209	ECC-1	luminal epithelium:	n/a
50	chr1:146715159-146715209	AG04449	skin:	fetal

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:146637222..146651713-chr1:146712141..146718911,44	MCF-7	breast:
2	chr1:146714651..146716663-chr1:147141111..147143150,2	MCF-7	breast:
3	chr1:146632272..146634531-chr1:146713179..146715784,3	MCF-7	breast:
4	chr1:146649315..146651856-chr1:146712649..146716301,4	MCF-7	breast:
5	chr1:146554717..146557790-chr1:146713275..146715735,7	MCF-7	breast:
6	chr1:146550590..146559110-chr1:146711930..146718078,31	K562	blood:
7	chr1:146714725..146717432-chr1:146860214..146861781,2	MCF-7	breast:
8	chr1:146638562..146647588-chr1:146711453..146720391,22	K562	blood:
9	chr1:146552515..146557737-chr1:146711619..146718083,31	K562	blood:
10	chr1:146640645..146647502-chr1:146711418..146719354,29	K562	blood:
11	chr1:146643464..146645140-chr1:146713602..146715704,127	MCF-7	breast:
12	chr1:146642817..146644911-chr1:146712966..146715242,14	K562	blood:
13	chr1:146554504..146557399-chr1:146713775..146716499,4	MCF-7	breast:
14	chr1:146638044..146647556-chr1:146707628..146717159,48	MCF-7	breast:

No data

Variant related genes	Relation type
FMO5	TF binding region
FMO5	CpG island
ENSG00000237188	Chromatin interaction
ENSG00000180867	Chromatin interaction
ENSG00000273071	Chromatin interaction
ENSG00000271721	Chromatin interaction
ENSG00000162836	Chromatin interaction
ENSG00000131791	Chromatin interaction
ENSG00000201142	Chromatin interaction
ENSG00000230832	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10159076	0.96[ASN][1000 genomes]
rs10751403	0.82[EUR][1000 genomes]
rs10751404	0.88[EUR][1000 genomes]
rs10751414	0.94[EUR][1000 genomes]
rs10793659	0.94[EUR][1000 genomes]
rs10793660	0.94[EUR][1000 genomes]
rs10793662	0.94[EUR][1000 genomes]
rs10793666	0.94[EUR][1000 genomes]
rs10900319	0.82[ASN][1000 genomes]
rs10900323	0.82[EUR][1000 genomes]
rs10900331	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10900334	0.94[EUR][1000 genomes]
rs10900335	0.94[EUR][1000 genomes]
rs11239937	0.82[EUR][1000 genomes]
rs12023638	0.95[ASN][1000 genomes]
rs12023644	0.86[ASN][1000 genomes]
rs12024575	0.96[ASN][1000 genomes]
rs12027580	0.90[ASN][1000 genomes]
rs12029358	0.96[ASN][1000 genomes]
rs12031124	0.87[ASN][1000 genomes]
rs12031956	0.95[ASN][1000 genomes]
rs12032300	0.95[ASN][1000 genomes]
rs12036480	0.87[ASN][1000 genomes]
rs12037324	0.96[ASN][1000 genomes]
rs12038539	0.95[ASN][1000 genomes]
rs12039254	0.96[ASN][1000 genomes]
rs12039364	0.91[ASN][1000 genomes]
rs12039400	0.96[ASN][1000 genomes]
rs12040321	0.89[ASN][1000 genomes]
rs12044706	0.98[ASN][1000 genomes]
rs12047915	0.98[ASN][1000 genomes]
rs13375602	0.89[ASN][1000 genomes]
rs1442759	0.82[EUR][1000 genomes]
rs1561879	0.82[EUR][1000 genomes]
rs1561880	0.82[EUR][1000 genomes]
rs1822311	0.88[EUR][1000 genomes]
rs1822312	0.88[EUR][1000 genomes]
rs1890036	0.94[EUR][1000 genomes]
rs1890037	0.94[EUR][1000 genomes]
rs1899484	0.82[EUR][1000 genomes]
rs1932982	0.94[EUR][1000 genomes]
rs2120004	0.88[EUR][1000 genomes]
rs2120005	0.88[EUR][1000 genomes]
rs2297751	0.89[ASN][1000 genomes]
rs3766521	0.93[ASN][1000 genomes]
rs41295831	0.94[EUR][1000 genomes]
rs4245679	0.94[EUR][1000 genomes]
rs4950386	0.82[EUR][1000 genomes]
rs4950394	0.94[EUR][1000 genomes]
rs4950407	0.94[EUR][1000 genomes]
rs59801063	0.82[ASN][1000 genomes]
rs6593753	0.94[EUR][1000 genomes]
rs6593754	0.88[EUR][1000 genomes]
rs6593766	0.89[ASN][1000 genomes]
rs6593768	0.94[EUR][1000 genomes]
rs6655945	0.93[ASN][1000 genomes]
rs6667498	0.94[EUR][1000 genomes]
rs6674562	0.82[ASN][1000 genomes]
rs6681716	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6682309	0.94[EUR][1000 genomes]
rs6683215	0.82[EUR][1000 genomes]
rs6690158	0.86[ASN][1000 genomes]
rs6692455	0.82[EUR][1000 genomes]
rs6694020	0.82[ASN][1000 genomes]
rs6696488	0.96[ASN][1000 genomes]
rs72708581	0.90[ASN][1000 genomes]
rs72999607	0.94[EUR][1000 genomes]
rs74122342	0.87[ASN][1000 genomes]
rs7512450	0.86[ASN][1000 genomes]
rs7517150	0.94[EUR][1000 genomes]
rs7519377	0.90[ASN][1000 genomes]
rs7521301	0.96[ASN][1000 genomes]
rs7523954	0.94[EUR][1000 genomes]
rs7531878	0.88[EUR][1000 genomes]
rs7535052	0.94[EUR][1000 genomes]
rs7547279	0.94[EUR][1000 genomes]
rs7552601	0.88[EUR][1000 genomes]
rs7555913	0.94[EUR][1000 genomes]
rs894472	0.88[EUR][1000 genomes]
rs894473	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872251	chr1:146152553-146803630	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	nsv872252	chr1:146471863-147398135	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv999546	chr1:146507577-147356574	Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
4	nsv535123	chr1:146507577-147356574	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
5	nsv492188	chr1:146507649-147381479	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
6	nsv916754	chr1:146507711-147417736	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
7	nsv547673	chr1:146510112-147398135	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
8	nsv547674	chr1:146522722-147396797	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
9	nsv998341	chr1:146531446-147384720	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
10	nsv535124	chr1:146531446-147384720	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
11	nsv1003493	chr1:146531446-147389944	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
12	nsv998209	chr1:146543722-147384720	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
13	nsv535126	chr1:146543722-147384720	Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
14	nsv872255	chr1:146550780-146969712	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
15	nsv872256	chr1:146556596-147410973	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
16	nsv1012331	chr1:146603479-147384720	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
17	nsv535131	chr1:146603479-147384720	Genic enhancers Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
18	nsv1009943	chr1:146618929-146893851	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
19	nsv535132	chr1:146618929-146893851	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
20	nsv872257	chr1:146643555-146724923	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
21	nsv437047	chr1:146643555-146841602	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
22	nsv1005809	chr1:146647822-146886419	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
23	nsv535134	chr1:146647822-146886419	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
24	nsv1004849	chr1:146661516-147286826	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
25	nsv535135	chr1:146661516-147286826	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
26	nsv547676	chr1:146686228-146996047	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
27	nsv872259	chr1:146688941-146724923	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
28	esv3325681	chr1:146713353-146715901	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:146713800-146715400	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr1:146713800-146715400	Active TSS	Rectal Smooth Muscle	rectum
3	chr1:146713800-146715600	Active TSS	Colonic Mucosa	Colon
4	chr1:146713800-146715600	Active TSS	Fetal Muscle Trunk	muscle
5	chr1:146713800-146715600	Active TSS	Psoas Muscle	Psoas
6	chr1:146713800-146715800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:146713800-146715800	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr1:146713800-146715800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr1:146713800-146715800	Active TSS	HSMMtube	muscle
10	chr1:146713800-146716000	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr1:146713800-146716000	Active TSS	H1 Cell Line	embryonic stem cell
12	chr1:146713800-146716000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:146713800-146716000	Active TSS	Right Ventricle	heart
14	chr1:146714000-146715400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:146714000-146715400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:146714000-146715400	Active TSS	Brain Angular Gyrus	brain
17	chr1:146714000-146715400	Active TSS	Brain Substantia Nigra	brain
18	chr1:146714000-146715400	Active TSS	Left Ventricle	heart
19	chr1:146714000-146715400	Active TSS	Placenta Amnion	Placenta Amnion
20	chr1:146714000-146715600	Active TSS	H9 Cell Line	embryonic stem cell
21	chr1:146714000-146715600	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr1:146714000-146715600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr1:146714000-146715600	Active TSS	Brain Anterior Caudate	brain
24	chr1:146714000-146715600	Active TSS	Ovary	ovary
25	chr1:146714000-146715800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:146714000-146715800	Active TSS	Aorta	Aorta
27	chr1:146714000-146715800	Active TSS	Brain Hippocampus Middle	brain
28	chr1:146714000-146715800	Active TSS	Fetal Thymus	thymus
29	chr1:146714000-146715800	Active TSS	A549	lung
30	chr1:146714000-146716000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:146714000-146716000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr1:146714000-146716000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr1:146714000-146716200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr1:146714000-146716200	Active TSS	NHDF-Ad	bronchial
35	chr1:146714000-146716400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:146714200-146715400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:146714200-146715400	Active TSS	Primary B cells from peripheral blood	blood
38	chr1:146714200-146715400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr1:146714200-146715400	Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr1:146714200-146715400	Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr1:146714200-146715400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr1:146714200-146715400	Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr1:146714200-146715400	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr1:146714200-146715400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr1:146714200-146715400	Active TSS	Duodenum Mucosa	Duodenum
46	chr1:146714200-146715400	Active TSS	Esophagus	oesophagus
47	chr1:146714200-146715400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr1:146714200-146715400	Active TSS	Gastric	stomach
49	chr1:146714200-146715400	Active TSS	Pancreas	Pancrea
50	chr1:146714200-146715400	Active TSS	Sigmoid Colon	Sigmoid Colon

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