Variant report

Variant	rs11241504
Chromosome Location	chr5:118756556-118756557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118754174..118756633-chr5:118758402..118759986,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11064	0.88[ASN][1000 genomes]
rs11241503	0.90[ASN][1000 genomes]
rs3822518	0.90[ASN][1000 genomes]
rs56341600	0.86[ASN][1000 genomes]
rs6894901	0.90[ASN][1000 genomes]
rs6895052	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv965533	chr5:118738884-118762384	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv4974	chr5:118750259-118795376	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118752600-118756800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr5:118753200-118756800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:118753200-118757200	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:118753400-118756600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:118753400-118756800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:118753800-118756800	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:118753800-118758400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:118753800-118762800	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:118754400-118756800	Enhancers	Placenta	Placenta
10	chr5:118754400-118757200	Enhancers	Primary B cells from cord blood	blood
11	chr5:118754400-118758000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:118754400-118758200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:118754800-118758000	Weak transcription	NHEK	skin
14	chr5:118754800-118758200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:118754800-118762200	Weak transcription	K562	blood
16	chr5:118755000-118759400	Enhancers	Liver	Liver
17	chr5:118755200-118757200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:118756200-118756600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr5:118756200-118762200	Weak transcription	Stomach Mucosa	stomach
20	chr5:118756400-118756800	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr5:118756400-118758000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:118756400-118758000	Weak transcription	Adipose Nuclei	Adipose
23	chr5:118756400-118758000	Weak transcription	Esophagus	oesophagus
24	chr5:118756400-118758000	Weak transcription	HMEC	breast
25	chr5:118756400-118761600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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