Variant report

Variant	rs11241657
Chromosome Location	chr11:63218616-63218617
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10515269	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11742241	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12153759	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12656404	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12658518	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1445170	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1445171	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1445172	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1445173	0.83[EUR][1000 genomes]
rs1963465	0.80[EUR][1000 genomes]
rs2590413	0.82[AMR][1000 genomes]
rs2590420	0.85[AMR][1000 genomes]
rs2590421	0.85[AMR][1000 genomes]
rs2590422	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2590423	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2590424	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2725107	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2725110	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs33966109	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34612958	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36038742	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6595380	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6595414	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6867428	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6873910	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6874602	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6890822	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7701876	0.83[AMR][1000 genomes]
rs7732166	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63216800-63220200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:63216800-63224600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:63217000-63219800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:63217000-63219800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:63217000-63220000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:63217000-63227200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:63217400-63220200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:63217400-63227200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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