Variant report

Variant	rs11241790
Chromosome Location	chr5:124479497-124479498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124478793..124481294-chr5:124482364..124483984,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10040497	0.95[AFR][1000 genomes]
rs10067150	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10067228	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11743350	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11744843	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11746972	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11747137	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12186483	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12188105	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13172568	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13178008	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13188430	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13359280	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1371373	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1371374	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1550356	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1550357	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1550358	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1550364	0.95[AFR][1000 genomes]
rs1550365	0.95[AFR][1000 genomes]
rs17449514	0.91[EUR][1000 genomes]
rs2218125	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28662294	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4836151	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4836153	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4836155	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5016082	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56171860	0.91[EUR][1000 genomes]
rs61581106	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62375663	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62375664	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6865099	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6865632	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6886317	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7719958	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7720525	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7721241	0.95[AFR][1000 genomes]
rs7724689	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7733868	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9686650	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599658	chr5:124459547-124513012	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124471400-124484600	Weak transcription	HSMM	muscle
2	chr5:124477200-124488200	Weak transcription	HUVEC	blood vessel
3	chr5:124477400-124484600	Weak transcription	Adipose Nuclei	Adipose
4	chr5:124478800-124484200	Weak transcription	NHDF-Ad	bronchial
5	chr5:124479200-124480000	Enhancers	Primary B cells from peripheral blood	blood

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