Variant report

Variant	rs112422834
Chromosome Location	chr2:189285410-189285411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189281923..189283556-chr2:189285039..189287990,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534341	chr2:189200405-189368467	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv533786	chr2:189248503-189354495	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv584055	chr2:189266823-189493686	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv274925	chr2:189285245-189291333	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189276400-189289800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:189276600-189290800	Weak transcription	Placenta	Placenta
3	chr2:189277000-189289400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:189277000-189289600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:189283400-189285800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:189283400-189285800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr2:189283400-189292200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:189283800-189285600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:189284000-189285800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:189285000-189285600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:189285200-189285600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr2:189285200-189285600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:189285200-189285600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:189285200-189285600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:189285200-189285600	ZNF genes & repeats	Aorta	Aorta
16	chr2:189285200-189285600	ZNF genes & repeats	Fetal Intestine Large	intestine
17	chr2:189285200-189285800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr2:189285200-189285800	ZNF genes & repeats	Fetal Lung	lung
19	chr2:189285400-189285600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
20	chr2:189285400-189290800	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links