Variant report

Variant	rs1124239
Chromosome Location	chr5:116008931-116008932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12521259	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1353046	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1389163	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1389164	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1493118	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1845177	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1908006	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1948429	0.88[AMR][1000 genomes]
rs4920922	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4920924	0.82[AMR][1000 genomes]
rs7716445	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7734305	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7737465	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs902987	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116003600-116013400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:116005000-116011000	Weak transcription	Brain Angular Gyrus	brain
3	chr5:116007200-116010800	Weak transcription	Brain Hippocampus Middle	brain
4	chr5:116007400-116009600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:116007400-116010800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:116007400-116015800	Weak transcription	Pancreas	Pancrea
7	chr5:116007600-116009400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:116007600-116009600	Enhancers	GM12878-XiMat	blood
9	chr5:116007600-116010600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr5:116007600-116011200	Weak transcription	Brain Substantia Nigra	brain
11	chr5:116008200-116010800	Weak transcription	Brain Anterior Caudate	brain
12	chr5:116008600-116009000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:116008800-116016600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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