Variant report

Variant	rs11242965
Chromosome Location	chr6:4663201-4663202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDYL-8	chr6:4663116-4663309	NONHSAT107471

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12201817	0.81[ASN][1000 genomes]
rs12201861	0.81[ASN][1000 genomes]
rs1971444	0.82[ASN][1000 genomes]
rs1971445	0.82[ASN][1000 genomes]
rs2063678	0.84[AFR][1000 genomes]
rs372218	0.95[EUR][1000 genomes]
rs67325872	0.82[ASN][1000 genomes]
rs72819438	0.82[ASN][1000 genomes]
rs9328267	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9378408	0.82[ASN][1000 genomes]
rs9392619	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv528627	chr6:4614058-4731340	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4659000-4664200	Weak transcription	Right Ventricle	heart
2	chr6:4661000-4663400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:4661200-4664200	Weak transcription	Right Atrium	heart
4	chr6:4661400-4664400	Weak transcription	Fetal Stomach	stomach
5	chr6:4661600-4664000	Weak transcription	Psoas Muscle	Psoas
6	chr6:4661600-4665000	Enhancers	Stomach Smooth Muscle	stomach
7	chr6:4661800-4663400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:4661800-4664400	Weak transcription	Spleen	Spleen
9	chr6:4661800-4664600	Weak transcription	Aorta	Aorta
10	chr6:4662000-4667200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:4662000-4667800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:4662400-4664800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:4662600-4663600	Enhancers	HSMMtube	muscle
14	chr6:4662800-4664200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:4662800-4665000	Enhancers	Fetal Muscle Leg	muscle
16	chr6:4663000-4664000	Weak transcription	K562	blood
17	chr6:4663000-4664000	Weak transcription	Osteobl	bone
18	chr6:4663000-4664200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:4663200-4664200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:4663200-4664200	Weak transcription	NHLF	lung
21	chr6:4663200-4664400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:4663200-4664400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:4663200-4664400	Weak transcription	NH-A	brain
24	chr6:4663200-4664600	Weak transcription	Placenta	Placenta

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