Variant report

Variant	rs112465717
Chromosome Location	chrX:73642549-73642550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:73641312..73645233-chrX:73652537..73656511,3	MCF-7	breast:
2	chrX:73639998..73642268-chrX:73642358..73645836,3	MCF-7	breast:
3	chrX:73641524..73644343-chrX:73668070..73670153,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147100	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3429687	chrX:73639127-73643875	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73638800-73643200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chrX:73639200-73643000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chrX:73639200-73643000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chrX:73639200-73643000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chrX:73639400-73642800	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chrX:73639400-73642800	Active TSS	Pancreas	Pancrea
7	chrX:73639400-73643000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chrX:73639400-73643000	Active TSS	Muscle Satellite Cultured Cells	--
9	chrX:73639400-73643000	Active TSS	Brain Inferior Temporal Lobe	brain
10	chrX:73639400-73643000	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chrX:73639400-73643000	Bivalent/Poised TSS	Fetal Stomach	stomach
12	chrX:73639400-73643000	Active TSS	NHLF	lung
13	chrX:73639400-73643200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chrX:73639400-73643200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chrX:73639400-73643200	Active TSS	Brain Cingulate Gyrus	brain
16	chrX:73639400-73643200	Active TSS	Fetal Kidney	kidney
17	chrX:73639400-73643200	Active TSS	NHDF-Ad	bronchial
18	chrX:73639400-73643400	Active TSS	H1 Cell Line	embryonic stem cell
19	chrX:73639400-73643400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chrX:73639400-73643400	Active TSS	Brain Germinal Matrix	brain
21	chrX:73639400-73643400	Active TSS	HSMMtube	muscle
22	chrX:73639400-73643800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chrX:73639600-73642600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
24	chrX:73639600-73642600	Active TSS	Aorta	Aorta
25	chrX:73639600-73642800	Active TSS	H9 Cell Line	embryonic stem cell
26	chrX:73639600-73642800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chrX:73639600-73642800	Active TSS	Right Ventricle	heart
28	chrX:73639600-73643000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chrX:73639600-73643000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chrX:73639600-73643000	Active TSS	Brain Angular Gyrus	brain
31	chrX:73639600-73643000	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chrX:73639600-73643000	Active TSS	Fetal Lung	lung
33	chrX:73639600-73643000	Active TSS	Left Ventricle	heart
34	chrX:73639600-73643000	Active TSS	Ovary	ovary
35	chrX:73639600-73643000	Active TSS	Rectal Smooth Muscle	rectum
36	chrX:73639600-73643200	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chrX:73639600-73643400	Active TSS	Colon Smooth Muscle	Colon
38	chrX:73639600-73643600	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chrX:73639600-73643600	Active TSS	HSMM	muscle
40	chrX:73639800-73642800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chrX:73639800-73642800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chrX:73639800-73642800	Active TSS	Placenta Amnion	Placenta Amnion
43	chrX:73639800-73642800	Active TSS	NHEK	skin
44	chrX:73639800-73643000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chrX:73639800-73643000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chrX:73639800-73643000	Active TSS	Cortex derived primary cultured neurospheres	brain
47	chrX:73639800-73643000	Active TSS	Brain Substantia Nigra	brain
48	chrX:73639800-73643000	Active TSS	Psoas Muscle	Psoas
49	chrX:73639800-73643000	Active TSS	Rectal Mucosa Donor 29	rectum
50	chrX:73639800-73643000	Active TSS	Right Atrium	heart

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