Variant report

Variant	rs112489181
Chromosome Location	chr7:153736423-153736424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr7:153736310-153736660	SK-N-SH	brain:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
2	REST	chr7:153736388-153736578	GM12878	blood:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
3	REST	chr7:153736411-153736603	PANC-1	pancreas:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
4	REST	chr7:153736285-153736747	PFSK-1	brain:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
5	REST	chr7:153736381-153736606	PFSK-1	brain:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
6	REST	chr7:153736405-153736558	PANC-1	pancreas:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
7	REST	chr7:153736290-153736784	H1-hESC	embryonic stem cell:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
8	REST	chr7:153736298-153736697	HepG2	liver:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
9	REST	chr7:153736302-153736680	U87	brain:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
10	REST	chr7:153736301-153736725	H1-hESC	embryonic stem cell:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
11	REST	chr7:153736408-153736574	GM12878	blood:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
12	REST	chr7:153736385-153736579	HepG2	liver:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
13	REST	chr7:153736406-153736598	SK-N-SH	brain:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
14	REST	chr7:153736336-153736690	GM12878	blood:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514
15	REST	chr7:153736305-153736698	SK-N-SH	brain:	n/a	chr7:153736494-153736514 chr7:153736497-153736510 chr7:153736494-153736507 chr7:153736499-153736508 chr7:153736494-153736514 chr7:153736494-153736514

Variant related genes	Relation type
ENSG00000270114	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532224	chr7:153237156-154182340	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv532225	chr7:153237356-153823089	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv532226	chr7:153287940-153823089	Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv995046	chr7:153287940-154056932	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1015586	chr7:153316045-154020595	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv817399	chr7:153326243-154009000	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv2758142	chr7:153393507-153758231	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2759577	chr7:153393507-153811838	ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv2756806	chr7:153453876-153811838	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv889518	chr7:153462806-153811655	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv8237	chr7:153478097-153808846	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv471648	chr7:153480651-153758231	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv824402	chr7:153483125-153860717	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv889531	chr7:153495423-153811655	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv1030152	chr7:153503237-153747353	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1031287	chr7:153503237-153754072	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv1030595	chr7:153503237-153823517	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv1033845	chr7:153505254-153754072	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv1033872	chr7:153515375-153754072	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv1028827	chr7:153530376-154182200	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv539215	chr7:153530376-154182200	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
22	nsv534576	chr7:153530377-154056932	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
23	nsv482297	chr7:153598807-153758231	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv429827	chr7:153660352-153934352	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv889551	chr7:153662151-153864665	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	esv2465998	chr7:153664757-153844588	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
27	nsv469546	chr7:153681785-153883800	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
28	nsv482279	chr7:153681785-153883800	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
29	esv1796925	chr7:153682815-153744947	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
30	nsv970620	chr7:153733850-153799984	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
31	nsv1019347	chr7:153734323-153934210	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links