Variant report

Variant	rs11249602
Chromosome Location	chr5:178336795-178336796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12186577	1.00[CEU][hapmap]
rs12186584	1.00[CEU][hapmap]
rs12187167	1.00[CEU][hapmap]
rs17078880	1.00[YRI][hapmap]
rs17664194	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3470830	chr5:178334452-178339256	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3470831	chr5:178334452-178339256	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335600-178340600	ZNF genes & repeats	Brain Substantia Nigra	brain
2	chr5:178335600-178349000	ZNF genes & repeats	Liver	Liver
3	chr5:178335800-178337800	ZNF genes & repeats	Gastric	stomach
4	chr5:178335800-178337800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
5	chr5:178335800-178342200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr5:178336000-178337800	ZNF genes & repeats	Brain Hippocampus Middle	brain
8	chr5:178336000-178338000	ZNF genes & repeats	Ovary	ovary
9	chr5:178336000-178340400	ZNF genes & repeats	Adipose Nuclei	Adipose
10	chr5:178336200-178337800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:178336200-178337800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
12	chr5:178336200-178337800	ZNF genes & repeats	Fetal Lung	lung
13	chr5:178336200-178338000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
14	chr5:178336200-178338000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:178336400-178337600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
16	chr5:178336400-178337800	ZNF genes & repeats	Aorta	Aorta
17	chr5:178336400-178337800	ZNF genes & repeats	Spleen	Spleen
18	chr5:178336600-178337800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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