Variant report

Variant	rs11249945
Chromosome Location	chr8:9628753-9628754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9622564..9624486-chr8:9628196..9629873,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10094989	0.80[EUR][1000 genomes]
rs10102170	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9557400-9632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:9566000-9639400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:9570000-9638600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:9603000-9638800	Weak transcription	Stomach Mucosa	stomach
5	chr8:9604200-9637200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:9609600-9634600	Weak transcription	Colonic Mucosa	Colon
7	chr8:9616000-9634400	Weak transcription	Fetal Heart	heart
8	chr8:9616800-9632200	Weak transcription	Pancreas	Pancrea
9	chr8:9618400-9628800	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr8:9618400-9637200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:9618600-9628800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:9618600-9628800	Strong transcription	Liver	Liver
13	chr8:9618600-9629200	Strong transcription	Primary hematopoietic stem cells	blood
14	chr8:9618600-9629600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:9618600-9630000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:9618600-9630200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr8:9618600-9630400	Strong transcription	Dnd41	blood
18	chr8:9618600-9631600	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr8:9618800-9628800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:9618800-9628800	Strong transcription	Placenta	Placenta
21	chr8:9618800-9629000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:9618800-9630400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:9619000-9628800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:9619000-9628800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr8:9619000-9628800	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr8:9619000-9629000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr8:9619000-9630400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr8:9619000-9630400	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr8:9619200-9628800	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr8:9619200-9629000	Strong transcription	Brain Anterior Caudate	brain
31	chr8:9621000-9629200	Strong transcription	Primary B cells from cord blood	blood
32	chr8:9623200-9630600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr8:9623800-9638800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:9624600-9633200	Weak transcription	NHEK	skin
35	chr8:9625800-9628800	Genic enhancers	Brain Inferior Temporal Lobe	brain
36	chr8:9626000-9628800	Strong transcription	Primary B cells from peripheral blood	blood
37	chr8:9626200-9634800	Weak transcription	Lung	lung
38	chr8:9626200-9638800	Weak transcription	Small Intestine	intestine
39	chr8:9626400-9640000	Weak transcription	Gastric	stomach
40	chr8:9626800-9628800	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr8:9626800-9634000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr8:9627200-9629000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr8:9627400-9628800	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr8:9627400-9628800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:9627400-9628800	Strong transcription	Fetal Kidney	kidney
46	chr8:9627400-9628800	Strong transcription	Fetal Muscle Leg	muscle
47	chr8:9627600-9628800	Genic enhancers	Brain Cingulate Gyrus	brain
48	chr8:9627600-9628800	Genic enhancers	Brain Hippocampus Middle	brain
49	chr8:9627600-9628800	Strong transcription	Fetal Lung	lung
50	chr8:9627600-9629000	Strong transcription	iPS-15b Cell Line	embryonic stem cell

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