Variant report

Variant	rs112520840
Chromosome Location	chr10:97309120-97309121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97308793..97313420-chr10:97319109..97323255,4	K562	blood:
2	chr10:97307694..97310147-chr10:97311672..97314430,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97296400-97311400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr10:97296800-97312600	Weak transcription	Placenta	Placenta
3	chr10:97301000-97315200	Enhancers	HepG2	liver
4	chr10:97301800-97311000	Weak transcription	Colonic Mucosa	Colon
5	chr10:97303000-97309600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:97304200-97309600	Weak transcription	Fetal Lung	lung
7	chr10:97304200-97310000	Weak transcription	Ovary	ovary
8	chr10:97304200-97310800	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:97304600-97312400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:97304800-97310200	Weak transcription	Fetal Brain Male	brain
11	chr10:97305000-97311200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:97305000-97311400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:97305200-97318600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:97305200-97319000	Weak transcription	HSMM	muscle
15	chr10:97305600-97309800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:97305800-97309600	Weak transcription	K562	blood
17	chr10:97306000-97309600	Weak transcription	Fetal Brain Female	brain
18	chr10:97306000-97310000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:97306200-97309200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:97306600-97311600	Enhancers	Fetal Heart	heart
21	chr10:97306600-97312200	Weak transcription	Fetal Intestine Small	intestine
22	chr10:97306800-97311400	Enhancers	Right Ventricle	heart
23	chr10:97306800-97313000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr10:97307000-97309600	Enhancers	Aorta	Aorta
25	chr10:97307000-97309600	Weak transcription	Brain Anterior Caudate	brain
26	chr10:97307000-97310400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr10:97307200-97309400	Weak transcription	Brain Angular Gyrus	brain
28	chr10:97307200-97309600	Weak transcription	Pancreas	Pancrea
29	chr10:97307200-97309800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr10:97307200-97310000	Weak transcription	Lung	lung
31	chr10:97307200-97310600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:97307400-97309400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr10:97307400-97310800	Weak transcription	Esophagus	oesophagus
34	chr10:97307800-97309800	Weak transcription	Gastric	stomach
35	chr10:97307800-97310000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:97307800-97310800	Weak transcription	Fetal Intestine Large	intestine
37	chr10:97308000-97309200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:97308000-97309600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:97308000-97309600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr10:97308000-97310000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:97308000-97311000	Enhancers	Fetal Stomach	stomach
42	chr10:97308000-97318600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:97308200-97309400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:97308200-97309400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr10:97308200-97309600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr10:97308200-97309600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:97308200-97309600	Weak transcription	Stomach Mucosa	stomach
48	chr10:97308200-97309800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr10:97308200-97310000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr10:97308400-97309600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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