Variant report

Variant	rs11252249
Chromosome Location	chr10:4037207-4037208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11252279	0.87[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.91[MEX][hapmap]
rs4242769	0.85[CHB][hapmap]
rs4880658	0.87[EUR][1000 genomes]
rs7919822	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11252249	WDR37	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4030200-4037600	Weak transcription	HUVEC	blood vessel
2	chr10:4030600-4037400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:4032200-4037600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:4035200-4037800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:4035800-4037600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:4036000-4037800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:4036800-4038400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:4036800-4043200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:4037000-4038200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:4037000-4038200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:4037000-4038600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:4037200-4038400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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