Variant report

Variant	rs11252359
Chromosome Location	chr10:4163685-4163686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3826233..3829471-chr10:4161588..4164936,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11252368	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4162600-4164200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:4162800-4164000	Enhancers	Fetal Muscle Trunk	muscle
3	chr10:4162800-4164000	Enhancers	Right Ventricle	heart
4	chr10:4162800-4164000	Enhancers	Stomach Smooth Muscle	stomach
5	chr10:4162800-4164200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:4162800-4164400	Enhancers	Primary hematopoietic stem cells	blood
7	chr10:4162800-4164400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:4162800-4164600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:4162800-4164600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr10:4162800-4164800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:4162800-4165400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:4162800-4165800	Enhancers	Fetal Lung	lung
13	chr10:4163000-4166800	Weak transcription	Pancreas	Pancrea
14	chr10:4163000-4173400	Weak transcription	NHLF	lung
15	chr10:4163200-4163800	Weak transcription	Right Atrium	heart
16	chr10:4163400-4163800	Enhancers	Fetal Heart	heart
17	chr10:4163400-4163800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr10:4163400-4164000	Enhancers	Lung	lung
19	chr10:4163400-4164200	Enhancers	Fetal Thymus	thymus
20	chr10:4163400-4164400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr10:4163600-4163800	Active TSS	Adipose Nuclei	Adipose
22	chr10:4163600-4163800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
23	chr10:4163600-4163800	Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr10:4163600-4164000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr10:4163600-4164000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:4163600-4164000	Enhancers	Colonic Mucosa	Colon
27	chr10:4163600-4164000	Enhancers	Duodenum Mucosa	Duodenum
28	chr10:4163600-4164000	Enhancers	Left Ventricle	heart
29	chr10:4163600-4164000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
30	chr10:4163600-4164200	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr10:4163600-4164200	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr10:4163600-4164200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:4163600-4164200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:4163600-4164200	Enhancers	Small Intestine	intestine
35	chr10:4163600-4164200	Flanking Active TSS	GM12878-XiMat	blood
36	chr10:4163600-4164400	Enhancers	Primary T cells fromperipheralblood	blood
37	chr10:4163600-4164400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:4163600-4164400	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr10:4163600-4164400	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr10:4163600-4164800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr10:4163600-4165200	Enhancers	Fetal Muscle Leg	muscle
42	chr10:4163600-4165200	Enhancers	Stomach Mucosa	stomach

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