Variant report

Variant	rs11252450
Chromosome Location	chr10:4336606-4336607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11813559	0.85[ASN][1000 genomes]
rs17269099	0.83[ASN][1000 genomes]
rs17269169	0.83[ASN][1000 genomes]
rs56413206	0.84[ASN][1000 genomes]
rs59983181	0.87[ASN][1000 genomes]
rs9423365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv518582	chr10:4328928-4336606	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4331200-4338200	Weak transcription	Brain Germinal Matrix	brain
2	chr10:4334600-4336800	Weak transcription	Fetal Brain Male	brain
3	chr10:4334600-4337400	Weak transcription	Fetal Brain Female	brain
4	chr10:4334800-4339400	Weak transcription	Aorta	Aorta
5	chr10:4334800-4342600	Weak transcription	Fetal Lung	lung
6	chr10:4334800-4349200	Weak transcription	Right Atrium	heart
7	chr10:4335000-4337000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:4336200-4343000	Weak transcription	NHDF-Ad	bronchial
9	chr10:4336600-4338600	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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