Variant report

Variant	rs11252746
Chromosome Location	chr10:4841905-4841906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11252804	0.82[JPT][hapmap]
rs11252805	0.82[JPT][hapmap]
rs11252824	1.00[YRI][hapmap]
rs2961601	0.93[ASN][1000 genomes]
rs2961608	0.87[ASN][1000 genomes]
rs4880696	0.82[JPT][hapmap]
rs4880697	1.00[JPT][hapmap]
rs4880698	1.00[JPT][hapmap]
rs4881367	0.82[JPT][hapmap]
rs7910207	0.82[JPT][hapmap]
rs9423375	0.92[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs11252746	FAM171A1	trans	lymphoblastoid	seeQTL
rs11252746	RNF130	trans	lymphoblastoid	seeQTL
rs11252746	AKR1E2	cis	cerebellum	SCAN
rs11252746	FAM75D1	trans	lymphoblastoid	seeQTL
rs11252746	UXS1	trans	lymphoblastoid	seeQTL
rs11252746	ADAMDEC1	trans	lymphoblastoid	seeQTL
rs11252746	AKR1E2	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4839000-4843600	Weak transcription	NHDF-Ad	bronchial
2	chr10:4839400-4842000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:4840800-4843800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:4840800-4843800	Weak transcription	NHEK	skin
5	chr10:4841000-4844600	Weak transcription	HMEC	breast
6	chr10:4841000-4844800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:4841800-4851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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