Variant report

Variant	rs11253173
Chromosome Location	chr10:5471543-5471544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5461943..5464045-chr10:5469897..5473123,3	MCF-7	breast:
2	chr10:5454032..5456711-chr10:5469446..5471600,2	K562	blood:
3	chr10:5468932..5472950-chr10:5475333..5478998,5	MCF-7	breast:
4	chr10:5469904..5472094-chr10:5474938..5476508,2	K562	blood:

Variant related genes	Relation type
ENSG00000173848	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12252597	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	nsv932104	chr10:5203626-5641023	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv549886	chr10:5205437-5632060	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1054865	chr10:5225305-5638119	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1045141	chr10:5450244-5491959	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv831774	chr10:5463556-5657421	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5455400-5475200	Weak transcription	Left Ventricle	heart
2	chr10:5455800-5488000	Weak transcription	Fetal Kidney	kidney
3	chr10:5456000-5473000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:5459200-5476200	Weak transcription	Thymus	Thymus
5	chr10:5459400-5473200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:5459400-5473200	Weak transcription	Psoas Muscle	Psoas
7	chr10:5459400-5480800	Weak transcription	Gastric	stomach
8	chr10:5459400-5481400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:5459400-5482400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:5459400-5483200	Weak transcription	Pancreas	Pancrea
11	chr10:5459400-5488600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:5465200-5473400	Weak transcription	HepG2	liver
13	chr10:5466200-5473200	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:5466400-5475400	Weak transcription	Adipose Nuclei	Adipose
15	chr10:5467000-5473200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:5467000-5473200	Weak transcription	NH-A	brain
17	chr10:5467000-5473400	Weak transcription	NHDF-Ad	bronchial
18	chr10:5467000-5483200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:5467200-5472800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:5467200-5473200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:5467200-5474200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:5467200-5488000	Weak transcription	Brain Anterior Caudate	brain
23	chr10:5467600-5476600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:5467600-5488200	Weak transcription	NHLF	lung
25	chr10:5467800-5475800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr10:5467800-5476400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:5468400-5474200	Strong transcription	Dnd41	blood
28	chr10:5468400-5484400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr10:5468600-5472600	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr10:5468600-5472600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr10:5468600-5473200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:5468600-5474200	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:5468600-5475200	Weak transcription	NHEK	skin
34	chr10:5468600-5476400	Weak transcription	GM12878-XiMat	blood
35	chr10:5468800-5488400	Weak transcription	Esophagus	oesophagus
36	chr10:5469000-5474400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:5469000-5487600	Weak transcription	Hela-S3	cervix
38	chr10:5469200-5472400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:5469200-5472600	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:5469200-5474000	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr10:5469400-5471600	Enhancers	Osteobl	bone
42	chr10:5469400-5474200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr10:5469600-5475200	Weak transcription	Fetal Heart	heart
44	chr10:5469600-5488200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr10:5469800-5471600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:5469800-5473200	Weak transcription	Fetal Thymus	thymus
47	chr10:5469800-5485400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr10:5470000-5473200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr10:5470000-5473200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr10:5470000-5473200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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