Variant report

Variant	rs112536957
Chromosome Location	chr5:74347824-74347825
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1835096	chr5:74336883-74356857	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv598654	chr5:74345369-74351228	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv3421723	chr5:74346596-74351294	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74330600-74348000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:74337600-74348200	Weak transcription	Left Ventricle	heart
3	chr5:74338600-74348000	Weak transcription	Psoas Muscle	Psoas
4	chr5:74344400-74348000	Weak transcription	Right Atrium	heart
5	chr5:74344800-74348000	Weak transcription	HSMMtube	muscle
6	chr5:74344800-74348400	Enhancers	Spleen	Spleen
7	chr5:74345400-74348000	Flanking Active TSS	Duodenum Mucosa	Duodenum
8	chr5:74345600-74348400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
9	chr5:74345800-74348400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr5:74346000-74348000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:74346000-74350200	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr5:74346400-74350400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr5:74346800-74348000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:74346800-74348000	Bivalent/Poised TSS	Primary B cells from cord blood	blood
15	chr5:74346800-74348000	Flanking Active TSS	Rectal Smooth Muscle	rectum
16	chr5:74346800-74348200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
17	chr5:74347000-74348000	Enhancers	Colonic Mucosa	Colon
18	chr5:74347000-74348000	Enhancers	Hela-S3	cervix
19	chr5:74347000-74348200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr5:74347000-74348400	Bivalent/Poised TSS	Fetal Kidney	kidney
21	chr5:74347000-74348400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
22	chr5:74347000-74350000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
23	chr5:74347000-74350000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:74347000-74350200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr5:74347000-74350800	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr5:74347200-74348000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr5:74347200-74348800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:74347200-74348800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:74347400-74348000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:74347400-74348000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr5:74347400-74348000	Enhancers	Brain Hippocampus Middle	brain
32	chr5:74347400-74348000	Weak transcription	Right Ventricle	heart
33	chr5:74347400-74348000	Bivalent Enhancer	HepG2	liver
34	chr5:74347400-74348200	Enhancers	Liver	Liver
35	chr5:74347400-74348400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
36	chr5:74347400-74348400	Flanking Active TSS	HMEC	breast
37	chr5:74347400-74348600	Bivalent/Poised TSS	Fetal Stomach	stomach
38	chr5:74347400-74349800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr5:74347400-74350000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
40	chr5:74347400-74350000	Active TSS	Brain Anterior Caudate	brain
41	chr5:74347400-74350200	Active TSS	Pancreas	Pancrea
42	chr5:74347400-74350200	Active TSS	Stomach Mucosa	stomach
43	chr5:74347400-74350200	Active TSS	NHDF-Ad	bronchial
44	chr5:74347400-74350400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
45	chr5:74347400-74350400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr5:74347400-74350400	Active TSS	Gastric	stomach
47	chr5:74347600-74348000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
48	chr5:74347600-74348000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr5:74347600-74348000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr5:74347600-74348000	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links