Variant report

Variant	rs11255505
Chromosome Location	chr10:5883945-5883946
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5853267..5855548-chr10:5881785..5884894,3	MCF-7	breast:
2	chr10:5852473..5857853-chr10:5880942..5888645,8	MCF-7	breast:
3	chr10:5851570..5858995-chr10:5881654..5887342,9	K562	blood:
4	chr10:5850869..5856128-chr10:5879241..5885807,8	K562	blood:

Variant related genes	Relation type
ENSG00000057608	Chromatin interaction
ENSG00000272764	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11255590	1.00[CEU][hapmap]
rs12242149	1.00[CEU][hapmap]
rs7088040	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv5654	chr10:5868365-5930634	Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv982902	chr10:5872818-5889953	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv3342274	chr10:5875995-5901345	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv1794948	chr10:5880066-5892545	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1795821	chr10:5880066-5893268	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv1801910	chr10:5881740-5898882	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv1801679	chr10:5883033-5891501	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv1793088	chr10:5883308-5892545	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5875000-5886600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:5878000-5885600	Weak transcription	K562	blood
3	chr10:5882200-5886800	Weak transcription	NHLF	lung
4	chr10:5882600-5886800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:5882600-5888000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:5882800-5886800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:5882800-5886800	Weak transcription	NHDF-Ad	bronchial
8	chr10:5882800-5888200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:5883000-5884000	Weak transcription	Spleen	Spleen
10	chr10:5883000-5886200	Weak transcription	Placenta	Placenta
11	chr10:5883000-5886800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:5883000-5886800	Weak transcription	Left Ventricle	heart
13	chr10:5883000-5887000	Weak transcription	Adipose Nuclei	Adipose
14	chr10:5883200-5884600	Enhancers	GM12878-XiMat	blood
15	chr10:5883200-5886400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:5883200-5887000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:5883200-5888000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:5883200-5897000	Enhancers	Primary B cells from peripheral blood	blood
19	chr10:5883400-5885800	Weak transcription	Fetal Heart	heart
20	chr10:5883400-5886800	Weak transcription	Brain Angular Gyrus	brain
21	chr10:5883400-5887000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:5883400-5887000	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:5883400-5889000	Enhancers	Primary B cells from cord blood	blood
24	chr10:5883600-5884000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:5883800-5886000	Weak transcription	HepG2	liver
26	chr10:5883800-5888000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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