Variant report

Variant	rs1125560
Chromosome Location	chr12:67790676-67790677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1027588	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1027589	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10506544	0.88[JPT][hapmap]
rs1060350	0.93[JPT][hapmap]
rs1066404	0.93[JPT][hapmap]
rs10878607	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10878608	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10878609	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10878611	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1112445	0.88[JPT][hapmap]
rs11176683	0.93[JPT][hapmap]
rs11176700	0.88[JPT][hapmap]
rs11176713	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11176714	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11176721	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1136080	0.87[JPT][hapmap]
rs1143954	0.88[JPT][hapmap]
rs1143956	0.88[JPT][hapmap]
rs1152877	0.93[JPT][hapmap]
rs1152895	0.88[JPT][hapmap]
rs1152896	0.93[JPT][hapmap]
rs1152897	0.88[JPT][hapmap]
rs1152898	0.88[JPT][hapmap]
rs1152901	0.88[JPT][hapmap]
rs1152902	0.93[JPT][hapmap]
rs1161085	0.92[JPT][hapmap]
rs12424158	0.88[JPT][hapmap]
rs1252386	0.88[JPT][hapmap]
rs1252387	0.88[JPT][hapmap]
rs1252388	0.87[JPT][hapmap]
rs1252402	0.93[JPT][hapmap]
rs1252405	0.93[JPT][hapmap]
rs1252407	0.88[JPT][hapmap]
rs1252424	0.88[JPT][hapmap]
rs12580790	0.93[JPT][hapmap]
rs1392587	0.93[JPT][hapmap]
rs1500434	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1697233	0.88[JPT][hapmap]
rs1920435	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1985476	0.88[JPT][hapmap]
rs2028213	0.87[JPT][hapmap]
rs4913538	0.93[JPT][hapmap]
rs698123	0.93[JPT][hapmap]
rs710630	0.88[JPT][hapmap]
rs7135979	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7137238	0.81[EUR][1000 genomes]
rs7297963	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7310455	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7315612	0.82[ASN][1000 genomes]
rs775312	0.88[JPT][hapmap]
rs775645	0.93[JPT][hapmap]
rs775651	0.88[JPT][hapmap]
rs775660	0.88[JPT][hapmap]
rs7973565	0.93[JPT][hapmap]
rs7977430	0.88[JPT][hapmap]
rs811827	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1125560	CAND1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67789800-67792800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:67790000-67794600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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