Variant report

Variant	rs11255662
Chromosome Location	chr10:5914303-5914304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5853596..5857884-chr10:5911550..5919142,12	MCF-7	breast:
2	chr10:5854510..5857923-chr10:5911220..5914905,6	MCF-7	breast:
3	chr10:5910241..5913072-chr10:5913979..5917301,3	MCF-7	breast:
4	chr10:5912116..5916503-chr10:5917203..5921455,4	K562	blood:
5	chr10:5914288..5916815-chr10:5925333..5927218,2	MCF-7	breast:
6	chr10:5912116..5915465-chr10:5917203..5919997,3	K562	blood:
7	chr10:5913606..5917218-chr10:5929180..5932208,4	MCF-7	breast:
8	chr10:5910337..5913057-chr10:5913896..5915551,2	K562	blood:
9	chr10:5913737..5922370-chr10:5922961..5932189,19	K562	blood:
10	chr10:5912111..5919800-chr10:5923492..5927477,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000134461	Chromatin interaction
ENSG00000272764	Chromatin interaction
ENSG00000057608	Chromatin interaction
ENSG00000134452	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11255548	0.85[AFR][1000 genomes]
rs12359234	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12777477	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12779398	0.86[AFR][1000 genomes]
rs12780246	0.88[AFR][1000 genomes]
rs907690	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv5654	chr10:5868365-5930634	Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv825229	chr10:5886905-5967697	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv466722	chr10:5893268-5916201	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv549904	chr10:5893268-5916201	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5894600-5916800	Weak transcription	Spleen	Spleen
2	chr10:5896400-5918200	Weak transcription	Fetal Lung	lung
3	chr10:5900000-5916600	Weak transcription	Pancreas	Pancrea
4	chr10:5900400-5916200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:5900600-5916200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:5901000-5916600	Weak transcription	Gastric	stomach
7	chr10:5901200-5918200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:5901400-5915200	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:5901600-5915600	Weak transcription	Brain Anterior Caudate	brain
10	chr10:5902400-5918200	Weak transcription	Primary T cells from cord blood	blood
11	chr10:5902800-5916200	Weak transcription	Fetal Intestine Large	intestine
12	chr10:5902800-5916600	Weak transcription	Brain Substantia Nigra	brain
13	chr10:5902800-5918000	Weak transcription	Lung	lung
14	chr10:5903000-5915400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:5903400-5918200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:5903400-5925000	Weak transcription	Fetal Kidney	kidney
17	chr10:5903600-5916600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:5903800-5916000	Weak transcription	NHEK	skin
19	chr10:5903800-5916400	Weak transcription	A549	lung
20	chr10:5903800-5918200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:5904400-5916200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:5904400-5916200	Weak transcription	Aorta	Aorta
23	chr10:5904600-5915600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:5904600-5916200	Weak transcription	NHDF-Ad	bronchial
25	chr10:5905000-5916200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:5905000-5916200	Weak transcription	Brain Angular Gyrus	brain
27	chr10:5905200-5918200	Weak transcription	HepG2	liver
28	chr10:5908800-5918400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:5909400-5915600	Weak transcription	K562	blood
30	chr10:5909400-5916400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:5909400-5918200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr10:5909600-5924800	Weak transcription	Stomach Mucosa	stomach
33	chr10:5909800-5914800	Weak transcription	Primary B cells from peripheral blood	blood
34	chr10:5909800-5918200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:5910600-5916600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:5911000-5916200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:5911200-5916200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:5911200-5918200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:5911400-5916200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr10:5911400-5916200	Weak transcription	Colon Smooth Muscle	Colon
41	chr10:5911400-5918200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:5911600-5915600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:5911600-5916200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:5911600-5916200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:5911600-5916400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:5911600-5916400	Weak transcription	Fetal Brain Female	brain
47	chr10:5911600-5916600	Weak transcription	Brain Germinal Matrix	brain
48	chr10:5911600-5918200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:5911600-5919800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr10:5911600-5926800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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