Variant report

Variant	rs11255774
Chromosome Location	chr10:5939059-5939060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5935432..5937214-chr10:5937982..5940044,2	MCF-7	breast:
2	chr10:5911390..5913912-chr10:5936445..5939123,2	MCF-7	breast:
3	chr10:5936708..5939190-chr10:5963280..5964936,2	MCF-7	breast:
4	chr10:5936753..5940088-chr10:5944945..5949348,3	MCF-7	breast:
5	chr10:5852308..5856409-chr10:5935538..5939554,4	K562	blood:

Variant related genes	Relation type
ENSG00000272764	Chromatin interaction
ENSG00000057608	Chromatin interaction
ENSG00000134452	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10508298	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508299	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11255698	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11255780	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11255971	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11255974	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11256009	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360409	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12767690	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774228	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774886	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12781700	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785055	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17319759	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976655	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1985072	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2387092	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36049919	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369297	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832959	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6602330	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067928	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082434	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090411	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893735	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919913	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv825229	chr10:5886905-5967697	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5933200-5948200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:5933200-5949800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:5933200-5977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:5933400-5948200	Weak transcription	Ovary	ovary
5	chr10:5933400-5948400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:5933400-5949800	Weak transcription	Fetal Brain Male	brain
7	chr10:5933600-5948200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:5933600-5951600	Weak transcription	Stomach Mucosa	stomach
9	chr10:5933800-5939200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:5933800-5941200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:5934000-5939800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:5934200-5939400	Strong transcription	Fetal Muscle Leg	muscle
13	chr10:5934600-5941000	Strong transcription	NHEK	skin
14	chr10:5934800-5940200	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:5934800-5948000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:5935200-5941800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:5935200-5947400	Weak transcription	Small Intestine	intestine
18	chr10:5935400-5939200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:5935400-5939800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr10:5935400-5940400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:5935400-5941200	Strong transcription	Fetal Lung	lung
22	chr10:5935600-5939400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:5935600-5940200	Strong transcription	Placenta	Placenta
24	chr10:5935600-5943000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:5935600-5962000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:5935800-5939200	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr10:5935800-5939400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:5935800-5940400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:5935800-5940400	Strong transcription	Osteobl	bone
30	chr10:5936000-5939200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
31	chr10:5936000-5939400	Genic enhancers	Primary T cells from cord blood	blood
32	chr10:5936000-5939400	Strong transcription	Esophagus	oesophagus
33	chr10:5936000-5939400	Strong transcription	Fetal Intestine Small	intestine
34	chr10:5936000-5939600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:5936000-5939600	Strong transcription	Stomach Smooth Muscle	stomach
36	chr10:5936000-5939600	Strong transcription	NHLF	lung
37	chr10:5936000-5940000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:5936000-5940000	Strong transcription	Adipose Nuclei	Adipose
39	chr10:5936000-5940000	Strong transcription	Fetal Stomach	stomach
40	chr10:5936000-5940200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:5936000-5940400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:5936000-5940400	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr10:5936000-5940800	Transcr. at gene 5' and 3'	K562	blood
44	chr10:5936000-5941000	Strong transcription	Liver	Liver
45	chr10:5936200-5939400	Strong transcription	Brain Germinal Matrix	brain
46	chr10:5936200-5941000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:5936200-5941000	Strong transcription	Fetal Muscle Trunk	muscle
48	chr10:5936400-5939200	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:5936400-5940400	Strong transcription	Rectal Smooth Muscle	rectum
50	chr10:5936400-5940600	Strong transcription	Fetal Brain Female	brain

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