Variant report

Variant	rs112559663
Chromosome Location	chr6:140265216-140265217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140254581..140256124-chr6:140264719..140266330,2	K562	blood:
2	chr6:140257717..140262130-chr6:140263178..140266087,5	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	esv3377085	chr6:140265088-140265298	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140259200-140265600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:140261000-140265400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:140261800-140265600	Enhancers	Osteobl	bone
4	chr6:140262000-140265600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:140262000-140265800	Enhancers	NHDF-Ad	bronchial
6	chr6:140262600-140265400	Enhancers	Adipose Nuclei	Adipose
7	chr6:140262600-140265800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:140262800-140266200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:140262800-140266600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:140263200-140265600	Enhancers	NHLF	lung
11	chr6:140263400-140265600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:140263400-140265600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:140263400-140265800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:140263600-140265400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:140263600-140265600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:140263600-140265600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:140263600-140265600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:140263600-140265600	Enhancers	Fetal Kidney	kidney
19	chr6:140263600-140265600	Enhancers	Hela-S3	cervix
20	chr6:140263800-140265600	Enhancers	HUVEC	blood vessel
21	chr6:140263800-140265800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr6:140263800-140266000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:140264000-140265400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:140264000-140265400	Enhancers	Colon Smooth Muscle	Colon
25	chr6:140264000-140265400	Enhancers	NH-A	brain
26	chr6:140264200-140265400	Enhancers	HMEC	breast
27	chr6:140264200-140265400	Enhancers	NHEK	skin
28	chr6:140264200-140265600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:140264200-140266200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:140264200-140268200	Weak transcription	Placenta	Placenta
31	chr6:140264400-140265400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr6:140264600-140265400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:140264600-140265400	Enhancers	HSMM	muscle
34	chr6:140264800-140270800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:140265000-140266400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:140265200-140265600	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr6:140265200-140266400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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