Variant report

Variant	rs112580627
Chromosome Location	chr4:153032251-153032252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:153031366..153033084-chr4:153033664..153036151,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3340846	chr4:153031727-153034275	Weak transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3347718	chr4:153031952-153034050	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3355964	chr4:153032252-153033600	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153023800-153040000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:153024200-153032600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr4:153024800-153037000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr4:153025400-153032600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr4:153025400-153032600	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr4:153026200-153032600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr4:153027200-153032400	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr4:153028000-153033200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr4:153028000-153035800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:153028200-153033200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:153028400-153033200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:153028400-153033600	Weak transcription	Psoas Muscle	Psoas
13	chr4:153028600-153033200	Weak transcription	Right Atrium	heart
14	chr4:153029600-153037200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:153030000-153032400	Enhancers	Fetal Stomach	stomach
16	chr4:153030600-153032600	Enhancers	Primary T cells from cord blood	blood
17	chr4:153030800-153032400	Enhancers	Fetal Heart	heart
18	chr4:153031000-153033200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr4:153031000-153033200	Weak transcription	Lung	lung
20	chr4:153031200-153032600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr4:153031200-153033200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr4:153031200-153036600	Weak transcription	Dnd41	blood
23	chr4:153031400-153032600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:153031400-153033200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:153031400-153033200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:153031400-153034400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:153031600-153033200	Weak transcription	Spleen	Spleen
28	chr4:153031600-153034200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:153031600-153035000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:153031600-153035400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:153031600-153036400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr4:153031600-153036600	Weak transcription	HUVEC	blood vessel
33	chr4:153031600-153036800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:153031600-153040000	Weak transcription	Right Ventricle	heart
35	chr4:153031800-153033200	Weak transcription	Adipose Nuclei	Adipose
36	chr4:153031800-153035400	Weak transcription	Fetal Brain Male	brain
37	chr4:153031800-153036400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr4:153032200-153032400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr4:153032200-153033200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr4:153032200-153033200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr4:153032200-153033200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:153032200-153033200	Weak transcription	Fetal Thymus	thymus
43	chr4:153032200-153033200	Weak transcription	Left Ventricle	heart
44	chr4:153032200-153033400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr4:153032200-153034400	Weak transcription	Fetal Muscle Leg	muscle
46	chr4:153032200-153035400	Weak transcription	Thymus	Thymus
47	chr4:153032200-153036200	Weak transcription	Stomach Smooth Muscle	stomach

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