Variant report

Variant	rs11259212
Chromosome Location	chr10:6537425-6537426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6536042..6540361-chr10:6554431..6558363,4	K562	blood:
2	chr10:6515689..6518540-chr10:6536895..6539799,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10906698	1.00[ASN][1000 genomes]
rs6602745	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv5687	chr10:6537209-6556751	Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6496600-6539200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr10:6499200-6562000	Weak transcription	Brain Anterior Caudate	brain
3	chr10:6501800-6557000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:6509200-6541200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:6510000-6572000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:6514000-6540000	Weak transcription	Psoas Muscle	Psoas
7	chr10:6517200-6557800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:6517600-6539600	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:6517600-6541800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:6518200-6556800	Weak transcription	Fetal Intestine Large	intestine
11	chr10:6519200-6544400	Weak transcription	Spleen	Spleen
12	chr10:6525800-6539400	Weak transcription	Primary B cells from cord blood	blood
13	chr10:6526600-6553000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:6527400-6542000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:6528400-6540800	Weak transcription	Brain Angular Gyrus	brain
16	chr10:6529000-6546200	Weak transcription	Esophagus	oesophagus
17	chr10:6529000-6552800	Weak transcription	Lung	lung
18	chr10:6530400-6552600	Weak transcription	K562	blood
19	chr10:6533600-6539800	Weak transcription	Brain Substantia Nigra	brain
20	chr10:6533800-6552800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:6534400-6545800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:6535200-6537800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr10:6535400-6537800	Genic enhancers	Primary T cells from cord blood	blood
24	chr10:6535400-6553400	Weak transcription	Gastric	stomach
25	chr10:6535800-6537800	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
26	chr10:6535800-6537800	Enhancers	Duodenum Mucosa	Duodenum
27	chr10:6535800-6537800	Enhancers	Small Intestine	intestine
28	chr10:6535800-6538000	Genic enhancers	Fetal Thymus	thymus
29	chr10:6535800-6538000	Genic enhancers	Dnd41	blood
30	chr10:6536000-6537600	Strong transcription	Pancreas	Pancrea
31	chr10:6536000-6537800	Strong transcription	Brain Hippocampus Middle	brain
32	chr10:6536000-6541400	Strong transcription	Fetal Muscle Leg	muscle
33	chr10:6536200-6537600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
34	chr10:6536200-6537600	Transcr. at gene 5' and 3'	Primary T killer memory cells from peripheral blood	blood
35	chr10:6536200-6537800	Genic enhancers	Primary hematopoietic stem cells	blood
36	chr10:6536200-6538000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:6536200-6539600	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:6536200-6540800	Strong transcription	H9 Cell Line	embryonic stem cell
39	chr10:6536400-6537800	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
40	chr10:6536400-6540000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:6536600-6537800	Genic enhancers	Thymus	Thymus
42	chr10:6536600-6552800	Weak transcription	Fetal Intestine Small	intestine
43	chr10:6536800-6537600	Enhancers	Primary B cells from peripheral blood	blood
44	chr10:6536800-6537600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr10:6536800-6537600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:6536800-6537800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr10:6536800-6540800	Strong transcription	Fetal Muscle Trunk	muscle
48	chr10:6537000-6537600	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:6537000-6537600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
50	chr10:6537000-6537600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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