Variant report

Variant	rs112603538
Chromosome Location	chr6:75315279-75315280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75312619..75316343-chr6:75677557..75681482,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2482249	chr6:75314032-75315415	Enhancers Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75307000-75316800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:75307000-75319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:75311200-75316000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:75313000-75315600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:75313000-75316200	Enhancers	Osteobl	bone
6	chr6:75313000-75317400	Enhancers	HSMMtube	muscle
7	chr6:75313200-75316400	Enhancers	Hela-S3	cervix
8	chr6:75313400-75315600	Weak transcription	NH-A	brain
9	chr6:75313400-75316000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:75313600-75316000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:75314000-75315400	Weak transcription	NHLF	lung
12	chr6:75314200-75315400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:75314800-75315800	Enhancers	A549	lung
14	chr6:75314800-75316000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:75315000-75316200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:75315000-75316200	Enhancers	HMEC	breast
17	chr6:75315200-75315600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:75315200-75315800	Genic enhancers	HSMM	muscle
19	chr6:75315200-75316200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:75315200-75316200	Enhancers	NHDF-Ad	bronchial
21	chr6:75315200-75317200	Enhancers	NHEK	skin
22	chr6:75315200-75318000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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