Variant report

Variant	rs1126147
Chromosome Location	chr2:67090833-67090834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67090168..67092771-chr2:67095579..67098311,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12713576	0.82[JPT][hapmap]
rs13010493	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2861285	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67089400-67102000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:67089600-67091000	Enhancers	Colon Smooth Muscle	Colon
3	chr2:67089600-67091200	Enhancers	NHEK	skin
4	chr2:67089600-67098000	Enhancers	NHLF	lung
5	chr2:67089600-67102400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:67089800-67091000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:67089800-67091000	Enhancers	Adipose Nuclei	Adipose
8	chr2:67089800-67091000	Enhancers	Fetal Stomach	stomach
9	chr2:67089800-67091000	Enhancers	Hela-S3	cervix
10	chr2:67089800-67091000	Enhancers	NH-A	brain
11	chr2:67089800-67091200	Enhancers	Rectal Smooth Muscle	rectum
12	chr2:67089800-67091200	Enhancers	HSMM	muscle
13	chr2:67089800-67091200	Enhancers	HSMMtube	muscle
14	chr2:67089800-67094800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:67090000-67091800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:67090600-67091000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:67090600-67091200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:67090600-67091200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:67090600-67091200	Enhancers	Ovary	ovary
20	chr2:67090600-67091400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:67090600-67093600	Weak transcription	Fetal Lung	lung
22	chr2:67090600-67094000	Weak transcription	Osteobl	bone
23	chr2:67090600-67098000	Enhancers	NHDF-Ad	bronchial
24	chr2:67090800-67091200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr2:67090800-67091400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr2:67090800-67094000	Weak transcription	Fetal Kidney	kidney

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