Variant report

Variant	rs11261470
Chromosome Location	chr8:86190651-86190652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16913694	1.00[LWK][hapmap]
rs2088305	1.00[LWK][hapmap]
rs2088306	1.00[LWK][hapmap]
rs2432069	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1024759	chr8:86162507-86361533	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539659	chr8:86162507-86361533	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv971674	chr8:86187966-86338484	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86158400-86191400	Weak transcription	Pancreas	Pancrea
2	chr8:86158800-86191400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:86168000-86196200	Weak transcription	NHEK	skin
4	chr8:86168000-86199000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:86170600-86191800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:86170800-86204400	Weak transcription	Ovary	ovary
7	chr8:86172200-86191400	Weak transcription	Primary T cells from cord blood	blood
8	chr8:86174600-86198200	Weak transcription	Left Ventricle	heart
9	chr8:86175800-86191200	Weak transcription	Brain Hippocampus Middle	brain
10	chr8:86175800-86191800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:86176400-86195000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:86177600-86191200	Weak transcription	Right Ventricle	heart
13	chr8:86178000-86198200	Weak transcription	Aorta	Aorta
14	chr8:86178200-86193400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:86179000-86191200	Weak transcription	Stomach Mucosa	stomach
16	chr8:86181200-86191400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:86181600-86190800	Weak transcription	Small Intestine	intestine
18	chr8:86181600-86191400	Weak transcription	Fetal Lung	lung
19	chr8:86182600-86196000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr8:86183800-86190800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:86184400-86191200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr8:86186200-86191400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr8:86186400-86190800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr8:86186400-86191400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:86186600-86198800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr8:86187800-86195400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr8:86188800-86191400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:86188800-86191400	Weak transcription	Esophagus	oesophagus
29	chr8:86188800-86194400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:86189800-86197800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr8:86190000-86191200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:86190000-86192000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:86190000-86194600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr8:86190000-86194800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr8:86190000-86201200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr8:86190200-86191800	Weak transcription	Liver	Liver
37	chr8:86190200-86191800	Weak transcription	Lung	lung
38	chr8:86190200-86194600	Weak transcription	Fetal Intestine Large	intestine
39	chr8:86190200-86203600	Weak transcription	Fetal Stomach	stomach
40	chr8:86190200-86208400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:86190200-86209600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:86190200-86209600	Weak transcription	Gastric	stomach
43	chr8:86190400-86195400	Weak transcription	Fetal Intestine Small	intestine

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